Gene : Seita.2G115200 S. italica v2.2
Defline:  (1 of 3) 2.1.1.79 - Cyclopropane-fatty-acyl-phospholipid synthase / Unsaturated-phospholipid methyltransferase Genomic Order:  1152
Name:  ? Seita.2G115200 Secondary Identifier:  ? PAC:32720015
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-4942 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G115200 0.5kb upstream 0.5kb upstream 7764 true scaffold_2: 11552591-11560354 Setaria italica
Seita.2G115200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 11559855-11560354 Setaria italica
Seita.2G115200 0.5kb downstream 0.5kb downstream 7764 true scaffold_2: 11552091-11559854 Setaria italica
Seita.2G115200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 11552091-11552590 Setaria italica
Seita.2G115200 1.0kb upstream 1.0kb upstream 8264 true scaffold_2: 11552591-11560854 Setaria italica
Seita.2G115200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 11559855-11560854 Setaria italica
Seita.2G115200 1.0kb downstream 1.0kb downstream 8264 true scaffold_2: 11551591-11559854 Setaria italica
Seita.2G115200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 11551591-11552590 Setaria italica
Seita.2G115200 2.0kb upstream 2.0kb upstream 9264 true scaffold_2: 11552591-11561854 Setaria italica
Seita.2G115200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 11559855-11561854 Setaria italica
Seita.2G115200 2.0kb downstream 2.0kb downstream 9264 true scaffold_2: 11550591-11559854 Setaria italica
Seita.2G115200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 11550591-11552590 Setaria italica
Seita.2G115200 5.0kb upstream 5.0kb upstream 12264 true scaffold_2: 11552591-11564854 Setaria italica
Seita.2G115200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 11559855-11564854 Setaria italica
Seita.2G115200 5.0kb downstream 5.0kb downstream 12264 true scaffold_2: 11547591-11559854 Setaria italica
Seita.2G115200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 11547591-11552590 Setaria italica
Seita.2G115200 10.0kb upstream 10.0kb upstream 17264 true scaffold_2: 11552591-11569854 Setaria italica
Seita.2G115200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 11559855-11569854 Setaria italica
Seita.2G115200 10.0kb downstream 10.0kb downstream 17264 true scaffold_2: 11542591-11559854 Setaria italica
Seita.2G115200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 11542591-11552590 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194828 5267 Panicoideae View MSA
124466811 5269 Grass View MSA
122047395 5273 Angiosperm View MSA
121346129 5274 Embryophyte View MSA
123428105 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.329     High  
cufflinks 21.026     High  
cufflinks 0.018     Low Low
cufflinks 0.007     Low Low
cufflinks 0.025     Low Low
cufflinks 19.55     High  
cufflinks 31.487     High  
cufflinks 20.251     High  
cufflinks 14.824     High  
cufflinks 15.356        
cufflinks 22.593     High  
cufflinks 0.005     Low Low
cufflinks 0.074     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.444        
cufflinks 0.02     Low Low
cufflinks 4.247        
cufflinks 0.035     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain