Gene : Seita.2G118600 S. italica v2.2
Defline:  (1 of 1) PF06609 - Fungal trichothecene efflux pump (TRI12) (TRI12) Genomic Order:  1186
Name:  ? Seita.2G118600 Secondary Identifier:  ? PAC:32722843
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G118600 0.5kb upstream 0.5kb upstream 2577 true scaffold_2: 12225436-12228012 Setaria italica
Seita.2G118600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 12227513-12228012 Setaria italica
Seita.2G118600 0.5kb downstream 0.5kb downstream 2577 true scaffold_2: 12224936-12227512 Setaria italica
Seita.2G118600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 12224936-12225435 Setaria italica
Seita.2G118600 1.0kb upstream 1.0kb upstream 3077 true scaffold_2: 12225436-12228512 Setaria italica
Seita.2G118600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 12227513-12228512 Setaria italica
Seita.2G118600 1.0kb downstream 1.0kb downstream 3077 true scaffold_2: 12224436-12227512 Setaria italica
Seita.2G118600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 12224436-12225435 Setaria italica
Seita.2G118600 2.0kb upstream 2.0kb upstream 4077 true scaffold_2: 12225436-12229512 Setaria italica
Seita.2G118600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 12227513-12229512 Setaria italica
Seita.2G118600 2.0kb downstream 2.0kb downstream 4077 true scaffold_2: 12223436-12227512 Setaria italica
Seita.2G118600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 12223436-12225435 Setaria italica
Seita.2G118600 5.0kb upstream 5.0kb upstream 7077 true scaffold_2: 12225436-12232512 Setaria italica
Seita.2G118600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 12227513-12232512 Setaria italica
Seita.2G118600 5.0kb downstream 5.0kb downstream 7077 true scaffold_2: 12220436-12227512 Setaria italica
Seita.2G118600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 12220436-12225435 Setaria italica
Seita.2G118600 10.0kb upstream 10.0kb upstream 12077 true scaffold_2: 12225436-12237512 Setaria italica
Seita.2G118600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 12227513-12237512 Setaria italica
Seita.2G118600 10.0kb downstream 10.0kb downstream 12077 true scaffold_2: 12215436-12227512 Setaria italica
Seita.2G118600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 12215436-12225435 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188463 5267 Panicoideae View MSA
124465970 5269 Grass View MSA
122041664 5273 Angiosperm View MSA
123429172 5275 Viridiplantae View MSA
121348445 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.051     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain