Gene : Seita.2G123100 S. italica v2.2
Defline:  (1 of 2) PTHR12700:SF12 - ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL Genomic Order:  1231
Name:  ? Seita.2G123100 Secondary Identifier:  ? PAC:32719583
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G123100 0.5kb upstream 0.5kb upstream 2796 true scaffold_2: 13921098-13923893 Setaria italica
Seita.2G123100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 13921098-13921597 Setaria italica
Seita.2G123100 0.5kb downstream 0.5kb downstream 2796 true scaffold_2: 13921598-13924393 Setaria italica
Seita.2G123100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 13923894-13924393 Setaria italica
Seita.2G123100 1.0kb upstream 1.0kb upstream 3296 true scaffold_2: 13920598-13923893 Setaria italica
Seita.2G123100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 13920598-13921597 Setaria italica
Seita.2G123100 1.0kb downstream 1.0kb downstream 3296 true scaffold_2: 13921598-13924893 Setaria italica
Seita.2G123100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 13923894-13924893 Setaria italica
Seita.2G123100 2.0kb upstream 2.0kb upstream 4296 true scaffold_2: 13919598-13923893 Setaria italica
Seita.2G123100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 13919598-13921597 Setaria italica
Seita.2G123100 2.0kb downstream 2.0kb downstream 4296 true scaffold_2: 13921598-13925893 Setaria italica
Seita.2G123100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 13923894-13925893 Setaria italica
Seita.2G123100 5.0kb upstream 5.0kb upstream 7296 true scaffold_2: 13916598-13923893 Setaria italica
Seita.2G123100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 13916598-13921597 Setaria italica
Seita.2G123100 5.0kb downstream 5.0kb downstream 7296 true scaffold_2: 13921598-13928893 Setaria italica
Seita.2G123100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 13923894-13928893 Setaria italica
Seita.2G123100 10.0kb upstream 10.0kb upstream 12296 true scaffold_2: 13911598-13923893 Setaria italica
Seita.2G123100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 13911598-13921597 Setaria italica
Seita.2G123100 10.0kb downstream 10.0kb downstream 12296 true scaffold_2: 13921598-13933893 Setaria italica
Seita.2G123100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 13923894-13933893 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177459 5267 Panicoideae View MSA
124585577 5269 Grass View MSA
122044674 5273 Angiosperm View MSA
121348780 5274 Embryophyte View MSA
123427707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.591        
cufflinks 8.187        
cufflinks 1.468       Low
cufflinks 2.091       Low
cufflinks 2.401        
cufflinks 8.313        
cufflinks 3.794        
cufflinks 10.782        
cufflinks 6.283        
cufflinks 15.143       High
cufflinks 8.4        
cufflinks 12.142        
cufflinks 16.226     High High
cufflinks 1.92       Low
cufflinks 11.02        
cufflinks 1.736       Low
cufflinks 16.125     High High
cufflinks 1.149       Low
cufflinks 1.694       Low
cufflinks 17.687     High High

0 Strain