Gene : Seita.2G205500 S. italica v2.2
Defline:  (1 of 1) PTHR21094:SF1 - GOLGI SNAP RECEPTOR COMPLEX MEMBER 1-1 Genomic Order:  2055
Name:  ? Seita.2G205500 Secondary Identifier:  ? PAC:32719722
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G205500 0.5kb upstream 0.5kb upstream 4611 true scaffold_2: 30677489-30682099 Setaria italica
Seita.2G205500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 30681600-30682099 Setaria italica
Seita.2G205500 0.5kb downstream 0.5kb downstream 4611 true scaffold_2: 30676989-30681599 Setaria italica
Seita.2G205500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 30676989-30677488 Setaria italica
Seita.2G205500 1.0kb upstream 1.0kb upstream 5111 true scaffold_2: 30677489-30682599 Setaria italica
Seita.2G205500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 30681600-30682599 Setaria italica
Seita.2G205500 1.0kb downstream 1.0kb downstream 5111 true scaffold_2: 30676489-30681599 Setaria italica
Seita.2G205500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 30676489-30677488 Setaria italica
Seita.2G205500 2.0kb upstream 2.0kb upstream 6111 true scaffold_2: 30677489-30683599 Setaria italica
Seita.2G205500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 30681600-30683599 Setaria italica
Seita.2G205500 2.0kb downstream 2.0kb downstream 6111 true scaffold_2: 30675489-30681599 Setaria italica
Seita.2G205500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 30675489-30677488 Setaria italica
Seita.2G205500 5.0kb upstream 5.0kb upstream 9111 true scaffold_2: 30677489-30686599 Setaria italica
Seita.2G205500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 30681600-30686599 Setaria italica
Seita.2G205500 5.0kb downstream 5.0kb downstream 9111 true scaffold_2: 30672489-30681599 Setaria italica
Seita.2G205500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 30672489-30677488 Setaria italica
Seita.2G205500 10.0kb upstream 10.0kb upstream 14111 true scaffold_2: 30677489-30691599 Setaria italica
Seita.2G205500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 30681600-30691599 Setaria italica
Seita.2G205500 10.0kb downstream 10.0kb downstream 14111 true scaffold_2: 30667489-30681599 Setaria italica
Seita.2G205500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 30667489-30677488 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189019 5267 Panicoideae View MSA
124589926 5269 Grass View MSA
122044900 5273 Angiosperm View MSA
121348787 5274 Embryophyte View MSA
123427960 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.427        
cufflinks 10.706        
cufflinks 6.552       Low
cufflinks 7.334        
cufflinks 5.699       Low
cufflinks 10.591        
cufflinks 7.251        
cufflinks 8.269        
cufflinks 6.315       Low
cufflinks 10.188        
cufflinks 10.583        
cufflinks 15.87     High High
cufflinks 16.212     High High
cufflinks 7.999        
cufflinks 15.307     High High
cufflinks 5.789       Low
cufflinks 14.837     High High
cufflinks 7.949        
cufflinks 8.515        
cufflinks 13.87       High

0 Strain