Gene : Seita.2G209200 S. italica v2.2
Defline:  (1 of 10) PF04484 - Family of unknown function (DUF566) (DUF566) Genomic Order:  2092
Name:  ? Seita.2G209200 Secondary Identifier:  ? PAC:32722163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G209200 0.5kb upstream 0.5kb upstream 6913 true scaffold_2: 31078691-31085603 Setaria italica
Seita.2G209200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31085104-31085603 Setaria italica
Seita.2G209200 0.5kb downstream 0.5kb downstream 6913 true scaffold_2: 31078191-31085103 Setaria italica
Seita.2G209200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31078191-31078690 Setaria italica
Seita.2G209200 1.0kb upstream 1.0kb upstream 7413 true scaffold_2: 31078691-31086103 Setaria italica
Seita.2G209200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31085104-31086103 Setaria italica
Seita.2G209200 1.0kb downstream 1.0kb downstream 7413 true scaffold_2: 31077691-31085103 Setaria italica
Seita.2G209200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31077691-31078690 Setaria italica
Seita.2G209200 2.0kb upstream 2.0kb upstream 8413 true scaffold_2: 31078691-31087103 Setaria italica
Seita.2G209200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31085104-31087103 Setaria italica
Seita.2G209200 2.0kb downstream 2.0kb downstream 8413 true scaffold_2: 31076691-31085103 Setaria italica
Seita.2G209200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31076691-31078690 Setaria italica
Seita.2G209200 5.0kb upstream 5.0kb upstream 11413 true scaffold_2: 31078691-31090103 Setaria italica
Seita.2G209200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31085104-31090103 Setaria italica
Seita.2G209200 5.0kb downstream 5.0kb downstream 11413 true scaffold_2: 31073691-31085103 Setaria italica
Seita.2G209200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31073691-31078690 Setaria italica
Seita.2G209200 10.0kb upstream 10.0kb upstream 16413 true scaffold_2: 31078691-31095103 Setaria italica
Seita.2G209200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31085104-31095103 Setaria italica
Seita.2G209200 10.0kb downstream 10.0kb downstream 16413 true scaffold_2: 31068691-31085103 Setaria italica
Seita.2G209200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31068691-31078690 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176670 5267 Panicoideae View MSA
124572936 5269 Grass View MSA
122050322 5273 Angiosperm View MSA
121348675 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.419       Low
cufflinks 5.991        
cufflinks 4.903        
cufflinks 4.447        
cufflinks 3.939        
cufflinks 5.613        
cufflinks 5.524        
cufflinks 3.286       Low
cufflinks 4.187        
cufflinks 3.614       Low
cufflinks 3.893        
cufflinks 9.338       High
cufflinks 7.547       High
cufflinks 4.76        
cufflinks 9.537       High
cufflinks 4.794        
cufflinks 6.017        
cufflinks 5.226        
cufflinks 3.655       Low
cufflinks 5.142        

0 Strain