Gene : Seita.2G212400 S. italica v2.2
Defline:  (1 of 4) PTHR18966//PTHR18966:SF223 - IONOTROPIC GLUTAMATE RECEPTOR Genomic Order:  2124
Name:  ? Seita.2G212400 Secondary Identifier:  ? PAC:32721257
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G212400 0.5kb upstream 0.5kb upstream 7232 true scaffold_2: 31348311-31355542 Setaria italica
Seita.2G212400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31355043-31355542 Setaria italica
Seita.2G212400 0.5kb downstream 0.5kb downstream 7232 true scaffold_2: 31347811-31355042 Setaria italica
Seita.2G212400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31347811-31348310 Setaria italica
Seita.2G212400 1.0kb upstream 1.0kb upstream 7732 true scaffold_2: 31348311-31356042 Setaria italica
Seita.2G212400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31355043-31356042 Setaria italica
Seita.2G212400 1.0kb downstream 1.0kb downstream 7732 true scaffold_2: 31347311-31355042 Setaria italica
Seita.2G212400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31347311-31348310 Setaria italica
Seita.2G212400 2.0kb upstream 2.0kb upstream 8732 true scaffold_2: 31348311-31357042 Setaria italica
Seita.2G212400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31355043-31357042 Setaria italica
Seita.2G212400 2.0kb downstream 2.0kb downstream 8732 true scaffold_2: 31346311-31355042 Setaria italica
Seita.2G212400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31346311-31348310 Setaria italica
Seita.2G212400 5.0kb upstream 5.0kb upstream 11732 true scaffold_2: 31348311-31360042 Setaria italica
Seita.2G212400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31355043-31360042 Setaria italica
Seita.2G212400 5.0kb downstream 5.0kb downstream 11732 true scaffold_2: 31343311-31355042 Setaria italica
Seita.2G212400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31343311-31348310 Setaria italica
Seita.2G212400 10.0kb upstream 10.0kb upstream 16732 true scaffold_2: 31348311-31365042 Setaria italica
Seita.2G212400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31355043-31365042 Setaria italica
Seita.2G212400 10.0kb downstream 10.0kb downstream 16732 true scaffold_2: 31338311-31355042 Setaria italica
Seita.2G212400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31338311-31348310 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199840 5267 Panicoideae View MSA
124589593 5269 Grass View MSA
122051662 5273 Angiosperm View MSA
121351346 5274 Embryophyte View MSA
123428796 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.013     Low  
cufflinks 0.007     Low  
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.203     Low  
cufflinks 0.087     Low  
cufflinks 6.097       High
cufflinks 0.842        
cufflinks 0.009     Low  
cufflinks 5.197       High
cufflinks 0.003     Low Low
cufflinks 4.228       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.853       High

0 Strain