Gene : Seita.2G212000 S. italica v2.2
Defline:  (1 of 2) PTHR12818:SF0 - NEF-ASSOCIATED PROTEIN 1 Genomic Order:  2120
Name:  ? Seita.2G212000 Secondary Identifier:  ? PAC:32720740
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G212000 0.5kb upstream 0.5kb upstream 3901 true scaffold_2: 31330035-31333935 Setaria italica
Seita.2G212000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31330035-31330534 Setaria italica
Seita.2G212000 0.5kb downstream 0.5kb downstream 3901 true scaffold_2: 31330535-31334435 Setaria italica
Seita.2G212000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31333936-31334435 Setaria italica
Seita.2G212000 1.0kb upstream 1.0kb upstream 4401 true scaffold_2: 31329535-31333935 Setaria italica
Seita.2G212000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31329535-31330534 Setaria italica
Seita.2G212000 1.0kb downstream 1.0kb downstream 4401 true scaffold_2: 31330535-31334935 Setaria italica
Seita.2G212000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31333936-31334935 Setaria italica
Seita.2G212000 2.0kb upstream 2.0kb upstream 5401 true scaffold_2: 31328535-31333935 Setaria italica
Seita.2G212000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31328535-31330534 Setaria italica
Seita.2G212000 2.0kb downstream 2.0kb downstream 5401 true scaffold_2: 31330535-31335935 Setaria italica
Seita.2G212000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31333936-31335935 Setaria italica
Seita.2G212000 5.0kb upstream 5.0kb upstream 8401 true scaffold_2: 31325535-31333935 Setaria italica
Seita.2G212000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31325535-31330534 Setaria italica
Seita.2G212000 5.0kb downstream 5.0kb downstream 8401 true scaffold_2: 31330535-31338935 Setaria italica
Seita.2G212000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31333936-31338935 Setaria italica
Seita.2G212000 10.0kb upstream 10.0kb upstream 13401 true scaffold_2: 31320535-31333935 Setaria italica
Seita.2G212000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31320535-31330534 Setaria italica
Seita.2G212000 10.0kb downstream 10.0kb downstream 13401 true scaffold_2: 31330535-31343935 Setaria italica
Seita.2G212000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31333936-31343935 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177149 5267 Panicoideae View MSA
124569815 5269 Grass View MSA
122041749 5273 Angiosperm View MSA
121344113 5274 Embryophyte View MSA
123423900 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.62        
cufflinks 2.614        
cufflinks 1.292        
cufflinks 0.849       Low
cufflinks 1.021       Low
cufflinks 2.853       High
cufflinks 1.543        
cufflinks 2.114        
cufflinks 1.913        
cufflinks 2.765       High
cufflinks 2.18        
cufflinks 1.937        
cufflinks 1.489        
cufflinks 2.256        
cufflinks 1.784        
cufflinks 2.253        
cufflinks 2.652        
cufflinks 2.891       High
cufflinks 0.922       Low
cufflinks 2.027        

0 Strain