Gene : Seita.2G215400 S. italica v2.2
Defline:  (1 of 1) PTHR22763:SF50 - E3 UBIQUITIN-PROTEIN LIGASE AIP2 Genomic Order:  2154
Name:  ? Seita.2G215400 Secondary Identifier:  ? PAC:32720031
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7511 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G215400 0.5kb upstream 0.5kb upstream 4369 true scaffold_2: 31726259-31730627 Setaria italica
Seita.2G215400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 31730128-31730627 Setaria italica
Seita.2G215400 0.5kb downstream 0.5kb downstream 4369 true scaffold_2: 31725759-31730127 Setaria italica
Seita.2G215400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 31725759-31726258 Setaria italica
Seita.2G215400 1.0kb upstream 1.0kb upstream 4869 true scaffold_2: 31726259-31731127 Setaria italica
Seita.2G215400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 31730128-31731127 Setaria italica
Seita.2G215400 1.0kb downstream 1.0kb downstream 4869 true scaffold_2: 31725259-31730127 Setaria italica
Seita.2G215400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 31725259-31726258 Setaria italica
Seita.2G215400 2.0kb upstream 2.0kb upstream 5869 true scaffold_2: 31726259-31732127 Setaria italica
Seita.2G215400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 31730128-31732127 Setaria italica
Seita.2G215400 2.0kb downstream 2.0kb downstream 5869 true scaffold_2: 31724259-31730127 Setaria italica
Seita.2G215400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 31724259-31726258 Setaria italica
Seita.2G215400 5.0kb upstream 5.0kb upstream 8869 true scaffold_2: 31726259-31735127 Setaria italica
Seita.2G215400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 31730128-31735127 Setaria italica
Seita.2G215400 5.0kb downstream 5.0kb downstream 8869 true scaffold_2: 31721259-31730127 Setaria italica
Seita.2G215400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 31721259-31726258 Setaria italica
Seita.2G215400 10.0kb upstream 10.0kb upstream 13869 true scaffold_2: 31726259-31740127 Setaria italica
Seita.2G215400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 31730128-31740127 Setaria italica
Seita.2G215400 10.0kb downstream 10.0kb downstream 13869 true scaffold_2: 31716259-31730127 Setaria italica
Seita.2G215400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 31716259-31726258 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026169 5273 Angiosperm View MSA
122183122 5267 Panicoideae View MSA
124571949 5269 Grass View MSA
123429130 5275 Viridiplantae View MSA
121350344 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.046        
cufflinks 5.67       Low
cufflinks 6.674        
cufflinks 8.63        
cufflinks 8.001        
cufflinks 5.502       Low
cufflinks 5.936       Low
cufflinks 7.175        
cufflinks 7.611        
cufflinks 11.164        
cufflinks 9.459        
cufflinks 15.398     High High
cufflinks 11.886        
cufflinks 8.659        
cufflinks 15.236     High High
cufflinks 8.028        
cufflinks 11.373        
cufflinks 25.02     High High
cufflinks 7.939        
cufflinks 8.849        

0 Strain