Gene : Seita.2G221700 S. italica v2.2
Defline:  (1 of 2) PTHR11558//PTHR11558:SF30 - SPERMIDINE/SPERMINE SYNTHASE Genomic Order:  2217
Name:  ? Seita.2G221700 Secondary Identifier:  ? PAC:32722545
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G221700 0.5kb upstream 0.5kb upstream 5689 true scaffold_2: 32312045-32317733 Setaria italica
Seita.2G221700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32312045-32312544 Setaria italica
Seita.2G221700 0.5kb downstream 0.5kb downstream 5689 true scaffold_2: 32312545-32318233 Setaria italica
Seita.2G221700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32317734-32318233 Setaria italica
Seita.2G221700 1.0kb upstream 1.0kb upstream 6189 true scaffold_2: 32311545-32317733 Setaria italica
Seita.2G221700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32311545-32312544 Setaria italica
Seita.2G221700 1.0kb downstream 1.0kb downstream 6189 true scaffold_2: 32312545-32318733 Setaria italica
Seita.2G221700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32317734-32318733 Setaria italica
Seita.2G221700 2.0kb upstream 2.0kb upstream 7189 true scaffold_2: 32310545-32317733 Setaria italica
Seita.2G221700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32310545-32312544 Setaria italica
Seita.2G221700 2.0kb downstream 2.0kb downstream 7189 true scaffold_2: 32312545-32319733 Setaria italica
Seita.2G221700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32317734-32319733 Setaria italica
Seita.2G221700 5.0kb upstream 5.0kb upstream 10189 true scaffold_2: 32307545-32317733 Setaria italica
Seita.2G221700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32307545-32312544 Setaria italica
Seita.2G221700 5.0kb downstream 5.0kb downstream 10189 true scaffold_2: 32312545-32322733 Setaria italica
Seita.2G221700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32317734-32322733 Setaria italica
Seita.2G221700 10.0kb upstream 10.0kb upstream 15189 true scaffold_2: 32302545-32317733 Setaria italica
Seita.2G221700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32302545-32312544 Setaria italica
Seita.2G221700 10.0kb downstream 10.0kb downstream 15189 true scaffold_2: 32312545-32327733 Setaria italica
Seita.2G221700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32317734-32327733 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187008 5267 Panicoideae View MSA
124590287 5269 Grass View MSA
122050339 5273 Angiosperm View MSA
121346949 5274 Embryophyte View MSA
123426712 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.099        
cufflinks 0.365        
cufflinks 0.022     Low Low
cufflinks 0.01     Low Low
cufflinks 0.032     Low Low
cufflinks 0.431        
cufflinks 0.175        
cufflinks 0.309        
cufflinks 0.18        
cufflinks 0.662        
cufflinks 0.324        
cufflinks 1.655        
cufflinks 5.796       High
cufflinks 0.021     Low Low
cufflinks 6.36       High
cufflinks 0.142        
cufflinks 2.582       High
cufflinks 0.065     Low  
cufflinks 0.044     Low  
cufflinks 2.728       High

0 Strain