Gene : Seita.2G224400 S. italica v2.2
Defline:  (1 of 1) PTHR30540//PTHR30540:SF5 - OSMOTIC STRESS POTASSIUM TRANSPORTER Genomic Order:  2244
Name:  ? Seita.2G224400 Secondary Identifier:  ? PAC:32722872
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G224400 0.5kb upstream 0.5kb upstream 5171 true scaffold_2: 32661060-32666230 Setaria italica
Seita.2G224400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32661060-32661559 Setaria italica
Seita.2G224400 0.5kb downstream 0.5kb downstream 5171 true scaffold_2: 32661560-32666730 Setaria italica
Seita.2G224400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32666231-32666730 Setaria italica
Seita.2G224400 1.0kb upstream 1.0kb upstream 5671 true scaffold_2: 32660560-32666230 Setaria italica
Seita.2G224400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32660560-32661559 Setaria italica
Seita.2G224400 1.0kb downstream 1.0kb downstream 5671 true scaffold_2: 32661560-32667230 Setaria italica
Seita.2G224400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32666231-32667230 Setaria italica
Seita.2G224400 2.0kb upstream 2.0kb upstream 6671 true scaffold_2: 32659560-32666230 Setaria italica
Seita.2G224400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32659560-32661559 Setaria italica
Seita.2G224400 2.0kb downstream 2.0kb downstream 6671 true scaffold_2: 32661560-32668230 Setaria italica
Seita.2G224400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32666231-32668230 Setaria italica
Seita.2G224400 5.0kb upstream 5.0kb upstream 9671 true scaffold_2: 32656560-32666230 Setaria italica
Seita.2G224400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32656560-32661559 Setaria italica
Seita.2G224400 5.0kb downstream 5.0kb downstream 9671 true scaffold_2: 32661560-32671230 Setaria italica
Seita.2G224400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32666231-32671230 Setaria italica
Seita.2G224400 10.0kb upstream 10.0kb upstream 14671 true scaffold_2: 32651560-32666230 Setaria italica
Seita.2G224400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32651560-32661559 Setaria italica
Seita.2G224400 10.0kb downstream 10.0kb downstream 14671 true scaffold_2: 32661560-32676230 Setaria italica
Seita.2G224400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32666231-32676230 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179028 5267 Panicoideae View MSA
124581469 5269 Grass View MSA
122049988 5273 Angiosperm View MSA
123429147 5275 Viridiplantae View MSA
121348736 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.766       Low
cufflinks 4.476        
cufflinks 31.783     High High
cufflinks 31.875     High High
cufflinks 27.73     High High
cufflinks 3.496        
cufflinks 7.147        
cufflinks 9.939        
cufflinks 7.499        
cufflinks 0.756       Low
cufflinks 0.71       Low
cufflinks 2.548        
cufflinks 2.733        
cufflinks 21.399     High High
cufflinks 2.359        
cufflinks 10.712        
cufflinks 3.255        
cufflinks 1.827        
cufflinks 18.938     High High
cufflinks 2.821        

0 Strain