Gene : Seita.2G223500 S. italica v2.2
Defline:  (1 of 2) PTHR28052:SF1 - UPF0545 PROTEIN C22ORF39 Genomic Order:  2235
Name:  ? Seita.2G223500 Secondary Identifier:  ? PAC:32719267
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G223500 0.5kb upstream 0.5kb upstream 4127 true scaffold_2: 32546359-32550485 Setaria italica
Seita.2G223500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 32549986-32550485 Setaria italica
Seita.2G223500 0.5kb downstream 0.5kb downstream 4127 true scaffold_2: 32545859-32549985 Setaria italica
Seita.2G223500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 32545859-32546358 Setaria italica
Seita.2G223500 1.0kb upstream 1.0kb upstream 4627 true scaffold_2: 32546359-32550985 Setaria italica
Seita.2G223500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 32549986-32550985 Setaria italica
Seita.2G223500 1.0kb downstream 1.0kb downstream 4627 true scaffold_2: 32545359-32549985 Setaria italica
Seita.2G223500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 32545359-32546358 Setaria italica
Seita.2G223500 2.0kb upstream 2.0kb upstream 5627 true scaffold_2: 32546359-32551985 Setaria italica
Seita.2G223500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 32549986-32551985 Setaria italica
Seita.2G223500 2.0kb downstream 2.0kb downstream 5627 true scaffold_2: 32544359-32549985 Setaria italica
Seita.2G223500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 32544359-32546358 Setaria italica
Seita.2G223500 5.0kb upstream 5.0kb upstream 8627 true scaffold_2: 32546359-32554985 Setaria italica
Seita.2G223500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 32549986-32554985 Setaria italica
Seita.2G223500 5.0kb downstream 5.0kb downstream 8627 true scaffold_2: 32541359-32549985 Setaria italica
Seita.2G223500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 32541359-32546358 Setaria italica
Seita.2G223500 10.0kb upstream 10.0kb upstream 13627 true scaffold_2: 32546359-32559985 Setaria italica
Seita.2G223500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 32549986-32559985 Setaria italica
Seita.2G223500 10.0kb downstream 10.0kb downstream 13627 true scaffold_2: 32536359-32549985 Setaria italica
Seita.2G223500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 32536359-32546358 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192038 5267 Panicoideae View MSA
124570475 5269 Grass View MSA
122047882 5273 Angiosperm View MSA
121343967 5274 Embryophyte View MSA
123425812 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.861        
cufflinks 2.403        
cufflinks 1.605        
cufflinks 1.4       Low
cufflinks 1.595        
cufflinks 2.742        
cufflinks 1.74        
cufflinks 2.268        
cufflinks 1.919        
cufflinks 2.853        
cufflinks 2.332        
cufflinks 2.095        
cufflinks 2.292        
cufflinks 1.371       Low
cufflinks 1.765        
cufflinks 2.805        
cufflinks 2.313        
cufflinks 6.056       High
cufflinks 1.128       Low
cufflinks 2.232        

0 Strain