Gene : Seita.2G228400 S. italica v2.2
Defline:  (1 of 18) PF00069//PF01453 - Protein kinase domain (Pkinase) // D-mannose binding lectin (B_lectin) Genomic Order:  2284
Name:  ? Seita.2G228400 Secondary Identifier:  ? PAC:32719448
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G228400 0.5kb upstream 0.5kb upstream 3792 true scaffold_2: 33030457-33034248 Setaria italica
Seita.2G228400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 33033749-33034248 Setaria italica
Seita.2G228400 0.5kb downstream 0.5kb downstream 3792 true scaffold_2: 33029957-33033748 Setaria italica
Seita.2G228400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 33029957-33030456 Setaria italica
Seita.2G228400 1.0kb upstream 1.0kb upstream 4292 true scaffold_2: 33030457-33034748 Setaria italica
Seita.2G228400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 33033749-33034748 Setaria italica
Seita.2G228400 1.0kb downstream 1.0kb downstream 4292 true scaffold_2: 33029457-33033748 Setaria italica
Seita.2G228400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 33029457-33030456 Setaria italica
Seita.2G228400 2.0kb upstream 2.0kb upstream 5292 true scaffold_2: 33030457-33035748 Setaria italica
Seita.2G228400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 33033749-33035748 Setaria italica
Seita.2G228400 2.0kb downstream 2.0kb downstream 5292 true scaffold_2: 33028457-33033748 Setaria italica
Seita.2G228400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 33028457-33030456 Setaria italica
Seita.2G228400 5.0kb upstream 5.0kb upstream 8292 true scaffold_2: 33030457-33038748 Setaria italica
Seita.2G228400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 33033749-33038748 Setaria italica
Seita.2G228400 5.0kb downstream 5.0kb downstream 8292 true scaffold_2: 33025457-33033748 Setaria italica
Seita.2G228400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 33025457-33030456 Setaria italica
Seita.2G228400 10.0kb upstream 10.0kb upstream 13292 true scaffold_2: 33030457-33043748 Setaria italica
Seita.2G228400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 33033749-33043748 Setaria italica
Seita.2G228400 10.0kb downstream 10.0kb downstream 13292 true scaffold_2: 33020457-33033748 Setaria italica
Seita.2G228400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 33020457-33030456 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192658 5267 Panicoideae View MSA
124583539 5269 Grass View MSA
122046776 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.854        
cufflinks 0.473        
cufflinks 0.525        
cufflinks 0.799        
cufflinks 0.972        
cufflinks 0.456        
cufflinks 0.203       Low
cufflinks 1.146        
cufflinks 0.376        
cufflinks 2.678        
cufflinks 1.287        
cufflinks 3.232        
cufflinks 3.704        
cufflinks 4.87       High
cufflinks 6.386       High
cufflinks 0.061     Low Low
cufflinks 4.669       High
cufflinks 1.029        
cufflinks 1.308        
cufflinks 5.4       High

0 Strain