Gene : Seita.2G164300 S. italica v2.2
Defline:  (1 of 2) PTHR11452//PTHR11452:SF32 - ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE Genomic Order:  1643
Name:  ? Seita.2G164300 Secondary Identifier:  ? PAC:32720741
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1301 Setaria italica pathologic  
Sitalica PWY-6527 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G164300 0.5kb upstream 0.5kb upstream 3253 true scaffold_2: 24197270-24200522 Setaria italica
Seita.2G164300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 24200023-24200522 Setaria italica
Seita.2G164300 0.5kb downstream 0.5kb downstream 3253 true scaffold_2: 24196770-24200022 Setaria italica
Seita.2G164300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 24196770-24197269 Setaria italica
Seita.2G164300 1.0kb upstream 1.0kb upstream 3753 true scaffold_2: 24197270-24201022 Setaria italica
Seita.2G164300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 24200023-24201022 Setaria italica
Seita.2G164300 1.0kb downstream 1.0kb downstream 3753 true scaffold_2: 24196270-24200022 Setaria italica
Seita.2G164300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 24196270-24197269 Setaria italica
Seita.2G164300 2.0kb upstream 2.0kb upstream 4753 true scaffold_2: 24197270-24202022 Setaria italica
Seita.2G164300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 24200023-24202022 Setaria italica
Seita.2G164300 2.0kb downstream 2.0kb downstream 4753 true scaffold_2: 24195270-24200022 Setaria italica
Seita.2G164300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 24195270-24197269 Setaria italica
Seita.2G164300 5.0kb upstream 5.0kb upstream 7753 true scaffold_2: 24197270-24205022 Setaria italica
Seita.2G164300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 24200023-24205022 Setaria italica
Seita.2G164300 5.0kb downstream 5.0kb downstream 7753 true scaffold_2: 24192270-24200022 Setaria italica
Seita.2G164300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 24192270-24197269 Setaria italica
Seita.2G164300 10.0kb upstream 10.0kb upstream 12753 true scaffold_2: 24197270-24210022 Setaria italica
Seita.2G164300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 24200023-24210022 Setaria italica
Seita.2G164300 10.0kb downstream 10.0kb downstream 12753 true scaffold_2: 24187270-24200022 Setaria italica
Seita.2G164300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 24187270-24197269 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192526 5267 Panicoideae View MSA
124466351 5269 Grass View MSA
122048958 5273 Angiosperm View MSA
121347217 5274 Embryophyte View MSA
123428348 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.012     Low  
cufflinks 0.022     Low  
cufflinks 0.007     Low  
cufflinks 0.01     Low  
cufflinks 0.003     Low Low
cufflinks 0.044     Low High
cufflinks 0.032     Low High
cufflinks 0.017     Low  
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.021     Low  
cufflinks 0.004     Low Low
cufflinks 0.018     Low  
cufflinks 0.017     Low  
cufflinks 0.02     Low  
cufflinks 0.019     Low  

0 Strain