Gene : Seita.2G173700 S. italica v2.2
Defline:  (1 of 1) PTHR30523//PTHR30523:SF8 - PHOSPHOENOLPYRUVATE CARBOXYLASE Genomic Order:  1737
Name:  ? Seita.2G173700 Secondary Identifier:  ? PAC:32722682
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-241 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  
Sitalica PWY-7115 Setaria italica pathologic  
Sitalica PWY-7117 Setaria italica pathologic  
Sitalica PWYQT-4429 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G173700 0.5kb upstream 0.5kb upstream 6314 true scaffold_2: 26198697-26205010 Setaria italica
Seita.2G173700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 26204511-26205010 Setaria italica
Seita.2G173700 0.5kb downstream 0.5kb downstream 6314 true scaffold_2: 26198197-26204510 Setaria italica
Seita.2G173700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 26198197-26198696 Setaria italica
Seita.2G173700 1.0kb upstream 1.0kb upstream 6814 true scaffold_2: 26198697-26205510 Setaria italica
Seita.2G173700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 26204511-26205510 Setaria italica
Seita.2G173700 1.0kb downstream 1.0kb downstream 6814 true scaffold_2: 26197697-26204510 Setaria italica
Seita.2G173700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 26197697-26198696 Setaria italica
Seita.2G173700 2.0kb upstream 2.0kb upstream 7814 true scaffold_2: 26198697-26206510 Setaria italica
Seita.2G173700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 26204511-26206510 Setaria italica
Seita.2G173700 2.0kb downstream 2.0kb downstream 7814 true scaffold_2: 26196697-26204510 Setaria italica
Seita.2G173700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 26196697-26198696 Setaria italica
Seita.2G173700 5.0kb upstream 5.0kb upstream 10814 true scaffold_2: 26198697-26209510 Setaria italica
Seita.2G173700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 26204511-26209510 Setaria italica
Seita.2G173700 5.0kb downstream 5.0kb downstream 10814 true scaffold_2: 26193697-26204510 Setaria italica
Seita.2G173700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 26193697-26198696 Setaria italica
Seita.2G173700 10.0kb upstream 10.0kb upstream 15814 true scaffold_2: 26198697-26214510 Setaria italica
Seita.2G173700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 26204511-26214510 Setaria italica
Seita.2G173700 10.0kb downstream 10.0kb downstream 15814 true scaffold_2: 26188697-26204510 Setaria italica
Seita.2G173700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 26188697-26198696 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180868 5267 Panicoideae View MSA
124572934 5269 Grass View MSA
122043424 5273 Angiosperm View MSA
123429064 5275 Viridiplantae View MSA
121350778 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 62.286     High  
cufflinks 26.269     High  
cufflinks 62.975     High  
cufflinks 51.777     High  
cufflinks 25.681     High  
cufflinks 21.178     High  
cufflinks 19.327     High Low
cufflinks 22.589     High  
cufflinks 23.743     High  
cufflinks 31.275     High  
cufflinks 45.939     High  
cufflinks 250.922     High High
cufflinks 72.344     High  
cufflinks 28.357     High  
cufflinks 55.619     High  
cufflinks 13.79     High Low
cufflinks 77.58     High  
cufflinks 20.319     High  
cufflinks 52.153     High  
cufflinks 119.185     High High

0 Strain