Gene : Seita.2G182300 S. italica v2.2
Defline:  (1 of 1) KOG4180 - Predicted kinase Genomic Order:  1823
Name:  ? Seita.2G182300 Secondary Identifier:  ? PAC:32720499
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5083 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G182300 0.5kb upstream 0.5kb upstream 9826 true scaffold_2: 27684063-27693888 Setaria italica
Seita.2G182300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 27693389-27693888 Setaria italica
Seita.2G182300 0.5kb downstream 0.5kb downstream 9826 true scaffold_2: 27683563-27693388 Setaria italica
Seita.2G182300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 27683563-27684062 Setaria italica
Seita.2G182300 1.0kb upstream 1.0kb upstream 10326 true scaffold_2: 27684063-27694388 Setaria italica
Seita.2G182300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 27693389-27694388 Setaria italica
Seita.2G182300 1.0kb downstream 1.0kb downstream 10326 true scaffold_2: 27683063-27693388 Setaria italica
Seita.2G182300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 27683063-27684062 Setaria italica
Seita.2G182300 2.0kb upstream 2.0kb upstream 11326 true scaffold_2: 27684063-27695388 Setaria italica
Seita.2G182300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 27693389-27695388 Setaria italica
Seita.2G182300 2.0kb downstream 2.0kb downstream 11326 true scaffold_2: 27682063-27693388 Setaria italica
Seita.2G182300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 27682063-27684062 Setaria italica
Seita.2G182300 5.0kb upstream 5.0kb upstream 14326 true scaffold_2: 27684063-27698388 Setaria italica
Seita.2G182300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 27693389-27698388 Setaria italica
Seita.2G182300 5.0kb downstream 5.0kb downstream 14326 true scaffold_2: 27679063-27693388 Setaria italica
Seita.2G182300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 27679063-27684062 Setaria italica
Seita.2G182300 10.0kb upstream 10.0kb upstream 19326 true scaffold_2: 27684063-27703388 Setaria italica
Seita.2G182300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 27693389-27703388 Setaria italica
Seita.2G182300 10.0kb downstream 10.0kb downstream 19326 true scaffold_2: 27674063-27693388 Setaria italica
Seita.2G182300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 27674063-27684062 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182224 5267 Panicoideae View MSA
124579122 5269 Grass View MSA
122049268 5273 Angiosperm View MSA
121346179 5274 Embryophyte View MSA
123425212 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.946        
cufflinks 0.668        
cufflinks 0.38        
cufflinks 0.324       Low
cufflinks 0.326       Low
cufflinks 0.577        
cufflinks 0.569        
cufflinks 0.431        
cufflinks 0.45        
cufflinks 0.347        
cufflinks 0.698        
cufflinks 0.702        
cufflinks 0.469        
cufflinks 0.556        
cufflinks 0.479        
cufflinks 1.575       High
cufflinks 0.624        
cufflinks 2.302       High
cufflinks 0.226       Low
cufflinks 0.551        

0 Strain