Gene : Seita.2G191500 S. italica v2.2
Defline:  (1 of 1) PTHR36039:SF2 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15 Genomic Order:  1915
Name:  ? Seita.2G191500 Secondary Identifier:  ? PAC:32721708
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G191500 0.5kb upstream 0.5kb upstream 1384 true scaffold_2: 28743385-28744768 Setaria italica
Seita.2G191500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28744269-28744768 Setaria italica
Seita.2G191500 0.5kb downstream 0.5kb downstream 1384 true scaffold_2: 28742885-28744268 Setaria italica
Seita.2G191500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28742885-28743384 Setaria italica
Seita.2G191500 1.0kb upstream 1.0kb upstream 1884 true scaffold_2: 28743385-28745268 Setaria italica
Seita.2G191500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28744269-28745268 Setaria italica
Seita.2G191500 1.0kb downstream 1.0kb downstream 1884 true scaffold_2: 28742385-28744268 Setaria italica
Seita.2G191500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28742385-28743384 Setaria italica
Seita.2G191500 2.0kb upstream 2.0kb upstream 2884 true scaffold_2: 28743385-28746268 Setaria italica
Seita.2G191500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28744269-28746268 Setaria italica
Seita.2G191500 2.0kb downstream 2.0kb downstream 2884 true scaffold_2: 28741385-28744268 Setaria italica
Seita.2G191500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28741385-28743384 Setaria italica
Seita.2G191500 5.0kb upstream 5.0kb upstream 5884 true scaffold_2: 28743385-28749268 Setaria italica
Seita.2G191500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28744269-28749268 Setaria italica
Seita.2G191500 5.0kb downstream 5.0kb downstream 5884 true scaffold_2: 28738385-28744268 Setaria italica
Seita.2G191500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28738385-28743384 Setaria italica
Seita.2G191500 10.0kb upstream 10.0kb upstream 10884 true scaffold_2: 28743385-28754268 Setaria italica
Seita.2G191500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28744269-28754268 Setaria italica
Seita.2G191500 10.0kb downstream 10.0kb downstream 10884 true scaffold_2: 28733385-28744268 Setaria italica
Seita.2G191500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28733385-28743384 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185990 5267 Panicoideae View MSA
124576361 5269 Grass View MSA
122048746 5273 Angiosperm View MSA
121311093 5274 Embryophyte View MSA
123348440 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.419        
cufflinks 1.838        
cufflinks 0.955       Low
cufflinks 1.036        
cufflinks 0.906       Low
cufflinks 2.16       High
cufflinks 1.062        
cufflinks 2.485       High
cufflinks 1.218        
cufflinks 3.467       High
cufflinks 1.367        
cufflinks 1.077        
cufflinks 1.472        
cufflinks 2.201       High
cufflinks 1.639        
cufflinks 1.226        
cufflinks 1.656        
cufflinks 1.007       Low
cufflinks 1.265        
cufflinks 2.153       High

0 Strain