Gene : Seita.2G283900 S. italica v2.2
Defline:  (1 of 1) KOG3046 - Transcription factor, subunit of SRB subcomplex of RNA polymerase II Genomic Order:  2839
Name:  ? Seita.2G283900 Secondary Identifier:  ? PAC:32722890
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G283900 0.5kb upstream 0.5kb upstream 4799 true scaffold_2: 38022943-38027741 Setaria italica
Seita.2G283900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38022943-38023442 Setaria italica
Seita.2G283900 0.5kb downstream 0.5kb downstream 4799 true scaffold_2: 38023443-38028241 Setaria italica
Seita.2G283900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38027742-38028241 Setaria italica
Seita.2G283900 1.0kb upstream 1.0kb upstream 5299 true scaffold_2: 38022443-38027741 Setaria italica
Seita.2G283900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38022443-38023442 Setaria italica
Seita.2G283900 1.0kb downstream 1.0kb downstream 5299 true scaffold_2: 38023443-38028741 Setaria italica
Seita.2G283900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38027742-38028741 Setaria italica
Seita.2G283900 2.0kb upstream 2.0kb upstream 6299 true scaffold_2: 38021443-38027741 Setaria italica
Seita.2G283900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38021443-38023442 Setaria italica
Seita.2G283900 2.0kb downstream 2.0kb downstream 6299 true scaffold_2: 38023443-38029741 Setaria italica
Seita.2G283900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38027742-38029741 Setaria italica
Seita.2G283900 5.0kb upstream 5.0kb upstream 9299 true scaffold_2: 38018443-38027741 Setaria italica
Seita.2G283900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38018443-38023442 Setaria italica
Seita.2G283900 5.0kb downstream 5.0kb downstream 9299 true scaffold_2: 38023443-38032741 Setaria italica
Seita.2G283900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38027742-38032741 Setaria italica
Seita.2G283900 10.0kb upstream 10.0kb upstream 14299 true scaffold_2: 38013443-38027741 Setaria italica
Seita.2G283900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38013443-38023442 Setaria italica
Seita.2G283900 10.0kb downstream 10.0kb downstream 14299 true scaffold_2: 38023443-38037741 Setaria italica
Seita.2G283900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38027742-38037741 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189613 5267 Panicoideae View MSA
124571000 5269 Grass View MSA
122043326 5273 Angiosperm View MSA
121345853 5274 Embryophyte View MSA
123425675 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.238        
cufflinks 4.252        
cufflinks 3.06        
cufflinks 4.636        
cufflinks 3.287        
cufflinks 4.556        
cufflinks 2.541       Low
cufflinks 4.115        
cufflinks 2.178       Low
cufflinks 10.306       High
cufflinks 3.735        
cufflinks 4.672        
cufflinks 6.527       High
cufflinks 3.468        
cufflinks 4.771        
cufflinks 2.799       Low
cufflinks 5.043        
cufflinks 3.473        
cufflinks 2.917        
cufflinks 4.458        

0 Strain