Gene : Seita.2G287800 S. italica v2.2
Defline:  (1 of 2) PTHR10585//PTHR10585:SF35 - ER LUMEN PROTEIN RETAINING RECEPTOR Genomic Order:  2878
Name:  ? Seita.2G287800 Secondary Identifier:  ? PAC:32719078
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G287800 0.5kb upstream 0.5kb upstream 3963 true scaffold_2: 38402839-38406801 Setaria italica
Seita.2G287800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38402839-38403338 Setaria italica
Seita.2G287800 0.5kb downstream 0.5kb downstream 3963 true scaffold_2: 38403339-38407301 Setaria italica
Seita.2G287800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38406802-38407301 Setaria italica
Seita.2G287800 1.0kb upstream 1.0kb upstream 4463 true scaffold_2: 38402339-38406801 Setaria italica
Seita.2G287800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38402339-38403338 Setaria italica
Seita.2G287800 1.0kb downstream 1.0kb downstream 4463 true scaffold_2: 38403339-38407801 Setaria italica
Seita.2G287800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38406802-38407801 Setaria italica
Seita.2G287800 2.0kb upstream 2.0kb upstream 5463 true scaffold_2: 38401339-38406801 Setaria italica
Seita.2G287800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38401339-38403338 Setaria italica
Seita.2G287800 2.0kb downstream 2.0kb downstream 5463 true scaffold_2: 38403339-38408801 Setaria italica
Seita.2G287800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38406802-38408801 Setaria italica
Seita.2G287800 5.0kb upstream 5.0kb upstream 8463 true scaffold_2: 38398339-38406801 Setaria italica
Seita.2G287800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38398339-38403338 Setaria italica
Seita.2G287800 5.0kb downstream 5.0kb downstream 8463 true scaffold_2: 38403339-38411801 Setaria italica
Seita.2G287800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38406802-38411801 Setaria italica
Seita.2G287800 10.0kb upstream 10.0kb upstream 13463 true scaffold_2: 38393339-38406801 Setaria italica
Seita.2G287800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38393339-38403338 Setaria italica
Seita.2G287800 10.0kb downstream 10.0kb downstream 13463 true scaffold_2: 38403339-38416801 Setaria italica
Seita.2G287800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38406802-38416801 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195775 5267 Panicoideae View MSA
124585975 5269 Grass View MSA
122049823 5273 Angiosperm View MSA
121349491 5274 Embryophyte View MSA
123426417 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.816     High  
cufflinks 20.749     High High
cufflinks 10.425       Low
cufflinks 11.346     High Low
cufflinks 10.106       Low
cufflinks 20.101     High High
cufflinks 15.27     High  
cufflinks 17.682     High  
cufflinks 13.221     High  
cufflinks 24.176     High High
cufflinks 14.022     High  
cufflinks 16.181     High  
cufflinks 17.576     High  
cufflinks 15.263     High  
cufflinks 15.547     High  
cufflinks 13.465     High  
cufflinks 18.175     High  
cufflinks 16.152     High  
cufflinks 16.421     High  
cufflinks 16.742     High  

0 Strain