Gene : Seita.2G298100 S. italica v2.2
Defline:  (1 of 1) PTHR33734:SF5 - LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 Genomic Order:  2981
Name:  ? Seita.2G298100 Secondary Identifier:  ? PAC:32718317
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G298100 0.5kb upstream 0.5kb upstream 3382 true scaffold_2: 39192712-39196093 Setaria italica
Seita.2G298100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39192712-39193211 Setaria italica
Seita.2G298100 0.5kb downstream 0.5kb downstream 3382 true scaffold_2: 39193212-39196593 Setaria italica
Seita.2G298100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39196094-39196593 Setaria italica
Seita.2G298100 1.0kb upstream 1.0kb upstream 3882 true scaffold_2: 39192212-39196093 Setaria italica
Seita.2G298100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39192212-39193211 Setaria italica
Seita.2G298100 1.0kb downstream 1.0kb downstream 3882 true scaffold_2: 39193212-39197093 Setaria italica
Seita.2G298100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39196094-39197093 Setaria italica
Seita.2G298100 2.0kb upstream 2.0kb upstream 4882 true scaffold_2: 39191212-39196093 Setaria italica
Seita.2G298100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39191212-39193211 Setaria italica
Seita.2G298100 2.0kb downstream 2.0kb downstream 4882 true scaffold_2: 39193212-39198093 Setaria italica
Seita.2G298100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39196094-39198093 Setaria italica
Seita.2G298100 5.0kb upstream 5.0kb upstream 7882 true scaffold_2: 39188212-39196093 Setaria italica
Seita.2G298100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39188212-39193211 Setaria italica
Seita.2G298100 5.0kb downstream 5.0kb downstream 7882 true scaffold_2: 39193212-39201093 Setaria italica
Seita.2G298100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39196094-39201093 Setaria italica
Seita.2G298100 10.0kb upstream 10.0kb upstream 12882 true scaffold_2: 39183212-39196093 Setaria italica
Seita.2G298100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39183212-39193211 Setaria italica
Seita.2G298100 10.0kb downstream 10.0kb downstream 12882 true scaffold_2: 39193212-39206093 Setaria italica
Seita.2G298100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39196094-39206093 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041196 5273 Angiosperm View MSA
122196804 5267 Panicoideae View MSA
124571342 5269 Grass View MSA
121350262 5274 Embryophyte View MSA
123381651 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.133        
cufflinks 3.278        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.061        
cufflinks 3.107        
cufflinks 5.02       High
cufflinks 1.562        
cufflinks 4.388        
cufflinks 2.463        
cufflinks 1.438        
cufflinks 0.719       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.627        
cufflinks 0.442       Low
cufflinks 2.843        
cufflinks 0.153       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.919        

0 Strain