Gene : Seita.2G311100 S. italica v2.2
Genomic Order:  3111 Name:  ? Seita.2G311100
Secondary Identifier:  ? PAC:32718110
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G311100 0.5kb upstream 0.5kb upstream 4289 true scaffold_2: 40191949-40196237 Setaria italica
Seita.2G311100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40195738-40196237 Setaria italica
Seita.2G311100 0.5kb downstream 0.5kb downstream 4289 true scaffold_2: 40191449-40195737 Setaria italica
Seita.2G311100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40191449-40191948 Setaria italica
Seita.2G311100 1.0kb upstream 1.0kb upstream 4789 true scaffold_2: 40191949-40196737 Setaria italica
Seita.2G311100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40195738-40196737 Setaria italica
Seita.2G311100 1.0kb downstream 1.0kb downstream 4789 true scaffold_2: 40190949-40195737 Setaria italica
Seita.2G311100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40190949-40191948 Setaria italica
Seita.2G311100 2.0kb upstream 2.0kb upstream 5789 true scaffold_2: 40191949-40197737 Setaria italica
Seita.2G311100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40195738-40197737 Setaria italica
Seita.2G311100 2.0kb downstream 2.0kb downstream 5789 true scaffold_2: 40189949-40195737 Setaria italica
Seita.2G311100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40189949-40191948 Setaria italica
Seita.2G311100 5.0kb upstream 5.0kb upstream 8789 true scaffold_2: 40191949-40200737 Setaria italica
Seita.2G311100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40195738-40200737 Setaria italica
Seita.2G311100 5.0kb downstream 5.0kb downstream 8789 true scaffold_2: 40186949-40195737 Setaria italica
Seita.2G311100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40186949-40191948 Setaria italica
Seita.2G311100 10.0kb upstream 10.0kb upstream 13789 true scaffold_2: 40191949-40205737 Setaria italica
Seita.2G311100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40195738-40205737 Setaria italica
Seita.2G311100 10.0kb downstream 10.0kb downstream 13789 true scaffold_2: 40181949-40195737 Setaria italica
Seita.2G311100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40181949-40191948 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189071 5267 Panicoideae View MSA
124579258 5269 Grass View MSA
122043961 5273 Angiosperm View MSA
121310217 5274 Embryophyte View MSA
123347767 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.243        
cufflinks 0.235        
cufflinks 0.06     Low  
cufflinks 0.07     Low  
cufflinks 0.108        
cufflinks 0.287       High
cufflinks 0.107     Low  
cufflinks 0.183        
cufflinks 0.158        
cufflinks 0.094     Low  
cufflinks 0.253        
cufflinks 0.162        
cufflinks 0.37       High
cufflinks 0.1     Low  
cufflinks 0.275       High
cufflinks 0.027     Low Low
cufflinks 0.161        
cufflinks 0.027     Low Low
cufflinks 0.045     Low Low
cufflinks 0.176        

0 Strain