Gene : Seita.2G248200 S. italica v2.2
Genomic Order:  2482 Name:  ? Seita.2G248200
Secondary Identifier:  ? PAC:32719857
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G248200 0.5kb upstream 0.5kb upstream 4205 true scaffold_2: 35153024-35157228 Setaria italica
Seita.2G248200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 35156729-35157228 Setaria italica
Seita.2G248200 0.5kb downstream 0.5kb downstream 4205 true scaffold_2: 35152524-35156728 Setaria italica
Seita.2G248200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 35152524-35153023 Setaria italica
Seita.2G248200 1.0kb upstream 1.0kb upstream 4705 true scaffold_2: 35153024-35157728 Setaria italica
Seita.2G248200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 35156729-35157728 Setaria italica
Seita.2G248200 1.0kb downstream 1.0kb downstream 4705 true scaffold_2: 35152024-35156728 Setaria italica
Seita.2G248200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 35152024-35153023 Setaria italica
Seita.2G248200 2.0kb upstream 2.0kb upstream 5705 true scaffold_2: 35153024-35158728 Setaria italica
Seita.2G248200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 35156729-35158728 Setaria italica
Seita.2G248200 2.0kb downstream 2.0kb downstream 5705 true scaffold_2: 35151024-35156728 Setaria italica
Seita.2G248200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 35151024-35153023 Setaria italica
Seita.2G248200 5.0kb upstream 5.0kb upstream 8705 true scaffold_2: 35153024-35161728 Setaria italica
Seita.2G248200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 35156729-35161728 Setaria italica
Seita.2G248200 5.0kb downstream 5.0kb downstream 8705 true scaffold_2: 35148024-35156728 Setaria italica
Seita.2G248200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 35148024-35153023 Setaria italica
Seita.2G248200 10.0kb upstream 10.0kb upstream 13705 true scaffold_2: 35153024-35166728 Setaria italica
Seita.2G248200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 35156729-35166728 Setaria italica
Seita.2G248200 10.0kb downstream 10.0kb downstream 13705 true scaffold_2: 35143024-35156728 Setaria italica
Seita.2G248200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 35143024-35153023 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190274 5267 Panicoideae View MSA
124579303 5269 Grass View MSA
122049938 5273 Angiosperm View MSA
121311655 5274 Embryophyte View MSA
123348925 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.227        
cufflinks 7.756        
cufflinks 9.358        
cufflinks 7.259        
cufflinks 6.215       Low
cufflinks 7.714        
cufflinks 8.262        
cufflinks 7.132        
cufflinks 6.127       Low
cufflinks 9.746       High
cufflinks 8.405        
cufflinks 9.631        
cufflinks 6.454       Low
cufflinks 9.137        
cufflinks 9.634        
cufflinks 9.852       High
cufflinks 9.518        
cufflinks 6.513       Low
cufflinks 9.478        
cufflinks 9.817       High

0 Strain