Gene : Seita.2G253000 S. italica v2.2
Defline:  (1 of 2) PTHR13937 - EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED Genomic Order:  2530
Name:  ? Seita.2G253000 Secondary Identifier:  ? PAC:32723353
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G253000 0.5kb upstream 0.5kb upstream 5108 true scaffold_2: 35578515-35583622 Setaria italica
Seita.2G253000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 35578515-35579014 Setaria italica
Seita.2G253000 0.5kb downstream 0.5kb downstream 5108 true scaffold_2: 35579015-35584122 Setaria italica
Seita.2G253000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 35583623-35584122 Setaria italica
Seita.2G253000 1.0kb upstream 1.0kb upstream 5608 true scaffold_2: 35578015-35583622 Setaria italica
Seita.2G253000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 35578015-35579014 Setaria italica
Seita.2G253000 1.0kb downstream 1.0kb downstream 5608 true scaffold_2: 35579015-35584622 Setaria italica
Seita.2G253000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 35583623-35584622 Setaria italica
Seita.2G253000 2.0kb upstream 2.0kb upstream 6608 true scaffold_2: 35577015-35583622 Setaria italica
Seita.2G253000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 35577015-35579014 Setaria italica
Seita.2G253000 2.0kb downstream 2.0kb downstream 6608 true scaffold_2: 35579015-35585622 Setaria italica
Seita.2G253000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 35583623-35585622 Setaria italica
Seita.2G253000 5.0kb upstream 5.0kb upstream 9608 true scaffold_2: 35574015-35583622 Setaria italica
Seita.2G253000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 35574015-35579014 Setaria italica
Seita.2G253000 5.0kb downstream 5.0kb downstream 9608 true scaffold_2: 35579015-35588622 Setaria italica
Seita.2G253000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 35583623-35588622 Setaria italica
Seita.2G253000 10.0kb upstream 10.0kb upstream 14608 true scaffold_2: 35569015-35583622 Setaria italica
Seita.2G253000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 35569015-35579014 Setaria italica
Seita.2G253000 10.0kb downstream 10.0kb downstream 14608 true scaffold_2: 35579015-35593622 Setaria italica
Seita.2G253000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 35583623-35593622 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178828 5267 Panicoideae View MSA
124573485 5269 Grass View MSA
122042650 5273 Angiosperm View MSA
121345410 5274 Embryophyte View MSA
123424846 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 87.78     High  
cufflinks 100.437     High High
cufflinks 52.086     High  
cufflinks 35.819     High Low
cufflinks 45.447     High Low
cufflinks 104.571     High High
cufflinks 76.764     High  
cufflinks 61.299     High  
cufflinks 105.955     High High
cufflinks 29.373     High Low
cufflinks 96.118     High  
cufflinks 79.474     High  
cufflinks 47.166     High  
cufflinks 58.868     High  
cufflinks 94.301     High  
cufflinks 57.275     High  
cufflinks 75.565     High  
cufflinks 79.63     High  
cufflinks 49.317     High  
cufflinks 87.797     High  

0 Strain