Gene : Seita.2G276900 S. italica v2.2
Defline:  (1 of 1) PTHR14217:SF1 - INOSITOL-TETRAKISPHOSPHATE 1-KINASE Genomic Order:  2769
Name:  ? Seita.2G276900 Secondary Identifier:  ? PAC:32720251
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6365 Setaria italica pathologic  
Sitalica PWY-6366 Setaria italica pathologic  
Sitalica PWY-6554 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G276900 0.5kb upstream 0.5kb upstream 5490 true scaffold_2: 37532098-37537587 Setaria italica
Seita.2G276900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37537088-37537587 Setaria italica
Seita.2G276900 0.5kb downstream 0.5kb downstream 5490 true scaffold_2: 37531598-37537087 Setaria italica
Seita.2G276900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37531598-37532097 Setaria italica
Seita.2G276900 1.0kb upstream 1.0kb upstream 5990 true scaffold_2: 37532098-37538087 Setaria italica
Seita.2G276900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37537088-37538087 Setaria italica
Seita.2G276900 1.0kb downstream 1.0kb downstream 5990 true scaffold_2: 37531098-37537087 Setaria italica
Seita.2G276900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37531098-37532097 Setaria italica
Seita.2G276900 2.0kb upstream 2.0kb upstream 6990 true scaffold_2: 37532098-37539087 Setaria italica
Seita.2G276900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37537088-37539087 Setaria italica
Seita.2G276900 2.0kb downstream 2.0kb downstream 6990 true scaffold_2: 37530098-37537087 Setaria italica
Seita.2G276900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37530098-37532097 Setaria italica
Seita.2G276900 5.0kb upstream 5.0kb upstream 9990 true scaffold_2: 37532098-37542087 Setaria italica
Seita.2G276900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37537088-37542087 Setaria italica
Seita.2G276900 5.0kb downstream 5.0kb downstream 9990 true scaffold_2: 37527098-37537087 Setaria italica
Seita.2G276900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37527098-37532097 Setaria italica
Seita.2G276900 10.0kb upstream 10.0kb upstream 14990 true scaffold_2: 37532098-37547087 Setaria italica
Seita.2G276900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37537088-37547087 Setaria italica
Seita.2G276900 10.0kb downstream 10.0kb downstream 14990 true scaffold_2: 37522098-37537087 Setaria italica
Seita.2G276900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37522098-37532097 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180697 5267 Panicoideae View MSA
124570274 5269 Grass View MSA
122045503 5273 Angiosperm View MSA
121345915 5274 Embryophyte View MSA
123428316 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.91        
cufflinks 5.333        
cufflinks 1.702        
cufflinks 1.399       Low
cufflinks 1.415       Low
cufflinks 5.188        
cufflinks 2.469        
cufflinks 4.072        
cufflinks 2.328        
cufflinks 2.039        
cufflinks 3.643        
cufflinks 5.7        
cufflinks 5.062        
cufflinks 1.832        
cufflinks 5.666        
cufflinks 2.074        
cufflinks 13.761       High
cufflinks 0.996       Low
cufflinks 1.558       Low
cufflinks 6.574       High

0 Strain