Gene : Seita.2G368500 S. italica v2.2
Defline:  (1 of 1) PTHR10593//PTHR10593:SF29 - SERINE/THREONINE-PROTEIN KINASE RIO Genomic Order:  3685
Name:  ? Seita.2G368500 Secondary Identifier:  ? PAC:32718417
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G368500 0.5kb upstream 0.5kb upstream 3654 true scaffold_2: 44258082-44261735 Setaria italica
Seita.2G368500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44258082-44258581 Setaria italica
Seita.2G368500 0.5kb downstream 0.5kb downstream 3654 true scaffold_2: 44258582-44262235 Setaria italica
Seita.2G368500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44261736-44262235 Setaria italica
Seita.2G368500 1.0kb upstream 1.0kb upstream 4154 true scaffold_2: 44257582-44261735 Setaria italica
Seita.2G368500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44257582-44258581 Setaria italica
Seita.2G368500 1.0kb downstream 1.0kb downstream 4154 true scaffold_2: 44258582-44262735 Setaria italica
Seita.2G368500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44261736-44262735 Setaria italica
Seita.2G368500 2.0kb upstream 2.0kb upstream 5154 true scaffold_2: 44256582-44261735 Setaria italica
Seita.2G368500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44256582-44258581 Setaria italica
Seita.2G368500 2.0kb downstream 2.0kb downstream 5154 true scaffold_2: 44258582-44263735 Setaria italica
Seita.2G368500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44261736-44263735 Setaria italica
Seita.2G368500 5.0kb upstream 5.0kb upstream 8154 true scaffold_2: 44253582-44261735 Setaria italica
Seita.2G368500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44253582-44258581 Setaria italica
Seita.2G368500 5.0kb downstream 5.0kb downstream 8154 true scaffold_2: 44258582-44266735 Setaria italica
Seita.2G368500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44261736-44266735 Setaria italica
Seita.2G368500 10.0kb upstream 10.0kb upstream 13154 true scaffold_2: 44248582-44261735 Setaria italica
Seita.2G368500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44248582-44258581 Setaria italica
Seita.2G368500 10.0kb downstream 10.0kb downstream 13154 true scaffold_2: 44258582-44271735 Setaria italica
Seita.2G368500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44261736-44271735 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188477 5267 Panicoideae View MSA
124586450 5269 Grass View MSA
122049366 5273 Angiosperm View MSA
121344195 5274 Embryophyte View MSA
123379996 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.839        
cufflinks 12.014        
cufflinks 12.401     High  
cufflinks 13.54     High High
cufflinks 12.824     High  
cufflinks 14.472     High High
cufflinks 13.393     High High
cufflinks 13.707     High High
cufflinks 11.098        
cufflinks 10.728        
cufflinks 12.737        
cufflinks 7.497       Low
cufflinks 10.978        
cufflinks 11.146        
cufflinks 9.624       Low
cufflinks 11.01        
cufflinks 9.58       Low
cufflinks 11.324     High  
cufflinks 10.556        
cufflinks 8.805       Low

0 Strain