Gene : Seita.2G369600 S. italica v2.2
Defline:  (1 of 8) KOG3399 - Predicted Yippee-type zinc-binding protein Genomic Order:  3696
Name:  ? Seita.2G369600 Secondary Identifier:  ? PAC:32718829
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G369600 0.5kb upstream 0.5kb upstream 3556 true scaffold_2: 44380453-44384008 Setaria italica
Seita.2G369600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44380453-44380952 Setaria italica
Seita.2G369600 0.5kb downstream 0.5kb downstream 3556 true scaffold_2: 44380953-44384508 Setaria italica
Seita.2G369600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44384009-44384508 Setaria italica
Seita.2G369600 1.0kb upstream 1.0kb upstream 4056 true scaffold_2: 44379953-44384008 Setaria italica
Seita.2G369600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44379953-44380952 Setaria italica
Seita.2G369600 1.0kb downstream 1.0kb downstream 4056 true scaffold_2: 44380953-44385008 Setaria italica
Seita.2G369600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44384009-44385008 Setaria italica
Seita.2G369600 2.0kb upstream 2.0kb upstream 5056 true scaffold_2: 44378953-44384008 Setaria italica
Seita.2G369600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44378953-44380952 Setaria italica
Seita.2G369600 2.0kb downstream 2.0kb downstream 5056 true scaffold_2: 44380953-44386008 Setaria italica
Seita.2G369600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44384009-44386008 Setaria italica
Seita.2G369600 5.0kb upstream 5.0kb upstream 8056 true scaffold_2: 44375953-44384008 Setaria italica
Seita.2G369600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44375953-44380952 Setaria italica
Seita.2G369600 5.0kb downstream 5.0kb downstream 8056 true scaffold_2: 44380953-44389008 Setaria italica
Seita.2G369600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44384009-44389008 Setaria italica
Seita.2G369600 10.0kb upstream 10.0kb upstream 13056 true scaffold_2: 44370953-44384008 Setaria italica
Seita.2G369600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44370953-44380952 Setaria italica
Seita.2G369600 10.0kb downstream 10.0kb downstream 13056 true scaffold_2: 44380953-44394008 Setaria italica
Seita.2G369600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44384009-44394008 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027710 5273 Angiosperm View MSA
122188128 5267 Panicoideae View MSA
124585828 5269 Grass View MSA
123428914 5275 Viridiplantae View MSA
121349627 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.263        
cufflinks 8.843       High
cufflinks 3.419        
cufflinks 3.552        
cufflinks 3.892        
cufflinks 6.67        
cufflinks 5.588        
cufflinks 5.05        
cufflinks 5.042        
cufflinks 4.178        
cufflinks 5.524        
cufflinks 4.656        
cufflinks 6.977       High
cufflinks 3.58        
cufflinks 6.937       High
cufflinks 3.522        
cufflinks 6.159        
cufflinks 2.544       Low
cufflinks 2.704       Low
cufflinks 7.407       High

0 Strain