Gene : Seita.2G377400 S. italica v2.2
Defline:  (1 of 2) PTHR12286:SF5 - SACCHAROPINE DEHYDROGENASE-LIKE OXIDOREDUCTASE Genomic Order:  3774
Name:  ? Seita.2G377400 Secondary Identifier:  ? PAC:32719276
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G377400 0.5kb upstream 0.5kb upstream 1198 true scaffold_2: 44911107-44912304 Setaria italica
Seita.2G377400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44911107-44911606 Setaria italica
Seita.2G377400 0.5kb downstream 0.5kb downstream 1198 true scaffold_2: 44911607-44912804 Setaria italica
Seita.2G377400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44912305-44912804 Setaria italica
Seita.2G377400 1.0kb upstream 1.0kb upstream 1698 true scaffold_2: 44910607-44912304 Setaria italica
Seita.2G377400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44910607-44911606 Setaria italica
Seita.2G377400 1.0kb downstream 1.0kb downstream 1698 true scaffold_2: 44911607-44913304 Setaria italica
Seita.2G377400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44912305-44913304 Setaria italica
Seita.2G377400 2.0kb upstream 2.0kb upstream 2698 true scaffold_2: 44909607-44912304 Setaria italica
Seita.2G377400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44909607-44911606 Setaria italica
Seita.2G377400 2.0kb downstream 2.0kb downstream 2698 true scaffold_2: 44911607-44914304 Setaria italica
Seita.2G377400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44912305-44914304 Setaria italica
Seita.2G377400 5.0kb upstream 5.0kb upstream 5698 true scaffold_2: 44906607-44912304 Setaria italica
Seita.2G377400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44906607-44911606 Setaria italica
Seita.2G377400 5.0kb downstream 5.0kb downstream 5698 true scaffold_2: 44911607-44917304 Setaria italica
Seita.2G377400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44912305-44917304 Setaria italica
Seita.2G377400 10.0kb upstream 10.0kb upstream 10698 true scaffold_2: 44901607-44912304 Setaria italica
Seita.2G377400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44901607-44911606 Setaria italica
Seita.2G377400 10.0kb downstream 10.0kb downstream 10698 true scaffold_2: 44911607-44922304 Setaria italica
Seita.2G377400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44912305-44922304 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117235 5267 Panicoideae View MSA
124411444 5269 Grass View MSA
122043116 5273 Angiosperm View MSA
123428910 5275 Viridiplantae View MSA
121350997 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.632        
cufflinks 2.228       High
cufflinks 0.651        
cufflinks 0.362        
cufflinks 0.427        
cufflinks 3.488       High
cufflinks 1.088        
cufflinks 1.409       High
cufflinks 0.382        
cufflinks 0.276     Low Low
cufflinks 0.647        
cufflinks 0.424        
cufflinks 0.816        
cufflinks 0.93        
cufflinks 0.694        
cufflinks 0.899        
cufflinks 0.474        
cufflinks 0.843        
cufflinks 0.204       Low
cufflinks 0.589        

0 Strain