Gene : Seita.2G381600 S. italica v2.2
Defline:  (1 of 1) PTHR31413:SF0 - NINJA-FAMILY PROTEIN AFP3 Genomic Order:  3816
Name:  ? Seita.2G381600 Secondary Identifier:  ? PAC:32720965
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G381600 0.5kb upstream 0.5kb upstream 4609 true scaffold_2: 45117522-45122130 Setaria italica
Seita.2G381600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45121631-45122130 Setaria italica
Seita.2G381600 0.5kb downstream 0.5kb downstream 4609 true scaffold_2: 45117022-45121630 Setaria italica
Seita.2G381600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45117022-45117521 Setaria italica
Seita.2G381600 1.0kb upstream 1.0kb upstream 5109 true scaffold_2: 45117522-45122630 Setaria italica
Seita.2G381600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45121631-45122630 Setaria italica
Seita.2G381600 1.0kb downstream 1.0kb downstream 5109 true scaffold_2: 45116522-45121630 Setaria italica
Seita.2G381600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45116522-45117521 Setaria italica
Seita.2G381600 2.0kb upstream 2.0kb upstream 6109 true scaffold_2: 45117522-45123630 Setaria italica
Seita.2G381600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45121631-45123630 Setaria italica
Seita.2G381600 2.0kb downstream 2.0kb downstream 6109 true scaffold_2: 45115522-45121630 Setaria italica
Seita.2G381600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45115522-45117521 Setaria italica
Seita.2G381600 5.0kb upstream 5.0kb upstream 9109 true scaffold_2: 45117522-45126630 Setaria italica
Seita.2G381600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45121631-45126630 Setaria italica
Seita.2G381600 5.0kb downstream 5.0kb downstream 9109 true scaffold_2: 45112522-45121630 Setaria italica
Seita.2G381600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45112522-45117521 Setaria italica
Seita.2G381600 10.0kb upstream 10.0kb upstream 14109 true scaffold_2: 45117522-45131630 Setaria italica
Seita.2G381600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45121631-45131630 Setaria italica
Seita.2G381600 10.0kb downstream 10.0kb downstream 14109 true scaffold_2: 45107522-45121630 Setaria italica
Seita.2G381600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45107522-45117521 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196772 5267 Panicoideae View MSA
124587117 5269 Grass View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.583        
cufflinks 1.521        
cufflinks 0.22       Low
cufflinks 0.129       Low
cufflinks 0.09       Low
cufflinks 1.174        
cufflinks 0.692        
cufflinks 0.602        
cufflinks 0.209       Low
cufflinks 2.489       High
cufflinks 1.616        
cufflinks 0.682        
cufflinks 2.269       High
cufflinks 0.835        
cufflinks 3.212       High
cufflinks 0.927        
cufflinks 2.11        
cufflinks 0.614        
cufflinks 0.625        
cufflinks 1.244        

0 Strain