Gene : Seita.2G389600 S. italica v2.2
Defline:  (1 of 2) PTHR10578:SF67 - PEROXISOMAL (S)-2-HYDROXY-ACID OXIDASE GLO3-RELATED Genomic Order:  3896
Name:  ? Seita.2G389600 Secondary Identifier:  ? PAC:32721194
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G389600 0.5kb upstream 0.5kb upstream 4370 true scaffold_2: 45645051-45649420 Setaria italica
Seita.2G389600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45645051-45645550 Setaria italica
Seita.2G389600 0.5kb downstream 0.5kb downstream 4370 true scaffold_2: 45645551-45649920 Setaria italica
Seita.2G389600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45649421-45649920 Setaria italica
Seita.2G389600 1.0kb upstream 1.0kb upstream 4870 true scaffold_2: 45644551-45649420 Setaria italica
Seita.2G389600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45644551-45645550 Setaria italica
Seita.2G389600 1.0kb downstream 1.0kb downstream 4870 true scaffold_2: 45645551-45650420 Setaria italica
Seita.2G389600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45649421-45650420 Setaria italica
Seita.2G389600 2.0kb upstream 2.0kb upstream 5870 true scaffold_2: 45643551-45649420 Setaria italica
Seita.2G389600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45643551-45645550 Setaria italica
Seita.2G389600 2.0kb downstream 2.0kb downstream 5870 true scaffold_2: 45645551-45651420 Setaria italica
Seita.2G389600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45649421-45651420 Setaria italica
Seita.2G389600 5.0kb upstream 5.0kb upstream 8870 true scaffold_2: 45640551-45649420 Setaria italica
Seita.2G389600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45640551-45645550 Setaria italica
Seita.2G389600 5.0kb downstream 5.0kb downstream 8870 true scaffold_2: 45645551-45654420 Setaria italica
Seita.2G389600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45649421-45654420 Setaria italica
Seita.2G389600 10.0kb upstream 10.0kb upstream 13870 true scaffold_2: 45635551-45649420 Setaria italica
Seita.2G389600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45635551-45645550 Setaria italica
Seita.2G389600 10.0kb downstream 10.0kb downstream 13870 true scaffold_2: 45645551-45659420 Setaria italica
Seita.2G389600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45649421-45659420 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026366 5273 Angiosperm View MSA
122065315 5267 Panicoideae View MSA
124591151 5269 Grass View MSA
121296296 5274 Embryophyte View MSA
123426843 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.45        
cufflinks 1.715        
cufflinks 0.184       Low
cufflinks 0.158       Low
cufflinks 0.233        
cufflinks 1.702        
cufflinks 0.274        
cufflinks 0.362        
cufflinks 0.274        
cufflinks 2.462       High
cufflinks 1.571        
cufflinks 1.904        
cufflinks 2.66       High
cufflinks 0.737        
cufflinks 1.762        
cufflinks 0.2       Low
cufflinks 2.069        
cufflinks 0.109       Low
cufflinks 0.245        
cufflinks 2.678       High

0 Strain