Gene : Seita.2G319500 S. italica v2.2
Defline:  (1 of 1) PTHR13789:SF224 - CTF2A LIKE OXIDOREDUCTASE-RELATED Genomic Order:  3195
Name:  ? Seita.2G319500 Secondary Identifier:  ? PAC:32723529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G319500 0.5kb upstream 0.5kb upstream 7504 true scaffold_2: 40849821-40857324 Setaria italica
Seita.2G319500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40856825-40857324 Setaria italica
Seita.2G319500 0.5kb downstream 0.5kb downstream 7504 true scaffold_2: 40849321-40856824 Setaria italica
Seita.2G319500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40849321-40849820 Setaria italica
Seita.2G319500 1.0kb upstream 1.0kb upstream 8004 true scaffold_2: 40849821-40857824 Setaria italica
Seita.2G319500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40856825-40857824 Setaria italica
Seita.2G319500 1.0kb downstream 1.0kb downstream 8004 true scaffold_2: 40848821-40856824 Setaria italica
Seita.2G319500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40848821-40849820 Setaria italica
Seita.2G319500 2.0kb upstream 2.0kb upstream 9004 true scaffold_2: 40849821-40858824 Setaria italica
Seita.2G319500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40856825-40858824 Setaria italica
Seita.2G319500 2.0kb downstream 2.0kb downstream 9004 true scaffold_2: 40847821-40856824 Setaria italica
Seita.2G319500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40847821-40849820 Setaria italica
Seita.2G319500 5.0kb upstream 5.0kb upstream 12004 true scaffold_2: 40849821-40861824 Setaria italica
Seita.2G319500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40856825-40861824 Setaria italica
Seita.2G319500 5.0kb downstream 5.0kb downstream 12004 true scaffold_2: 40844821-40856824 Setaria italica
Seita.2G319500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40844821-40849820 Setaria italica
Seita.2G319500 10.0kb upstream 10.0kb upstream 17004 true scaffold_2: 40849821-40866824 Setaria italica
Seita.2G319500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40856825-40866824 Setaria italica
Seita.2G319500 10.0kb downstream 10.0kb downstream 17004 true scaffold_2: 40839821-40856824 Setaria italica
Seita.2G319500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40839821-40849820 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191590 5267 Panicoideae View MSA
124573034 5269 Grass View MSA
122047624 5273 Angiosperm View MSA
123429089 5275 Viridiplantae View MSA
121349985 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.136       Low
cufflinks 0.5        
cufflinks 1.236        
cufflinks 1.55       High
cufflinks 1.419        
cufflinks 0.346        
cufflinks 0.74        
cufflinks 1.097        
cufflinks 0.663        
cufflinks 0.341        
cufflinks 0.167        
cufflinks 0.077     Low Low
cufflinks 0.12     Low Low
cufflinks 1.275        
cufflinks 0.303        
cufflinks 2.659       High
cufflinks 0.112     Low Low
cufflinks 0.377        
cufflinks 2.667       High
cufflinks 0.14       Low

0 Strain