Gene : Seita.2G343300 S. italica v2.2
Defline:  (1 of 14) PTHR23430 - HISTONE H2A Genomic Order:  3433
Name:  ? Seita.2G343300 Secondary Identifier:  ? PAC:32720403
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G343300 0.5kb upstream 0.5kb upstream 1575 true scaffold_2: 42527995-42529569 Setaria italica
Seita.2G343300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42527995-42528494 Setaria italica
Seita.2G343300 0.5kb downstream 0.5kb downstream 1575 true scaffold_2: 42528495-42530069 Setaria italica
Seita.2G343300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42529570-42530069 Setaria italica
Seita.2G343300 1.0kb upstream 1.0kb upstream 2075 true scaffold_2: 42527495-42529569 Setaria italica
Seita.2G343300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42527495-42528494 Setaria italica
Seita.2G343300 1.0kb downstream 1.0kb downstream 2075 true scaffold_2: 42528495-42530569 Setaria italica
Seita.2G343300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42529570-42530569 Setaria italica
Seita.2G343300 2.0kb upstream 2.0kb upstream 3075 true scaffold_2: 42526495-42529569 Setaria italica
Seita.2G343300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42526495-42528494 Setaria italica
Seita.2G343300 2.0kb downstream 2.0kb downstream 3075 true scaffold_2: 42528495-42531569 Setaria italica
Seita.2G343300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42529570-42531569 Setaria italica
Seita.2G343300 5.0kb upstream 5.0kb upstream 6075 true scaffold_2: 42523495-42529569 Setaria italica
Seita.2G343300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42523495-42528494 Setaria italica
Seita.2G343300 5.0kb downstream 5.0kb downstream 6075 true scaffold_2: 42528495-42534569 Setaria italica
Seita.2G343300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42529570-42534569 Setaria italica
Seita.2G343300 10.0kb upstream 10.0kb upstream 11075 true scaffold_2: 42518495-42529569 Setaria italica
Seita.2G343300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42518495-42528494 Setaria italica
Seita.2G343300 10.0kb downstream 10.0kb downstream 11075 true scaffold_2: 42528495-42539569 Setaria italica
Seita.2G343300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42529570-42539569 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191601 5267 Panicoideae View MSA
124585124 5269 Grass View MSA
122050010 5273 Angiosperm View MSA
121343825 5274 Embryophyte View MSA
123427518 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.36     High  
cufflinks 74.502     High  
cufflinks 8.486       Low
cufflinks 18.66     High  
cufflinks 22.583     High  
cufflinks 69.419     High  
cufflinks 44.039     High  
cufflinks 124.081     High High
cufflinks 48.557     High  
cufflinks 96.684     High High
cufflinks 43.688     High  
cufflinks 52.461     High  
cufflinks 47.47     High  
cufflinks 19.11     High  
cufflinks 56.312     High  
cufflinks 9.11       Low
cufflinks 65.202     High  
cufflinks 12.073     High Low
cufflinks 13.263     High Low
cufflinks 76.61     High  

0 Strain