Gene : Seita.2G438800 S. italica v2.2
Defline:  (1 of 1) PF13616 - PPIC-type PPIASE domain (Rotamase_3) Genomic Order:  4388
Name:  ? Seita.2G438800 Secondary Identifier:  ? PAC:32718817
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G438800 0.5kb upstream 0.5kb upstream 3913 true scaffold_2: 48807098-48811010 Setaria italica
Seita.2G438800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48810511-48811010 Setaria italica
Seita.2G438800 0.5kb downstream 0.5kb downstream 3913 true scaffold_2: 48806598-48810510 Setaria italica
Seita.2G438800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48806598-48807097 Setaria italica
Seita.2G438800 1.0kb upstream 1.0kb upstream 4413 true scaffold_2: 48807098-48811510 Setaria italica
Seita.2G438800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48810511-48811510 Setaria italica
Seita.2G438800 1.0kb downstream 1.0kb downstream 4413 true scaffold_2: 48806098-48810510 Setaria italica
Seita.2G438800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48806098-48807097 Setaria italica
Seita.2G438800 2.0kb upstream 2.0kb upstream 5413 true scaffold_2: 48807098-48812510 Setaria italica
Seita.2G438800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48810511-48812510 Setaria italica
Seita.2G438800 2.0kb downstream 2.0kb downstream 5413 true scaffold_2: 48805098-48810510 Setaria italica
Seita.2G438800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48805098-48807097 Setaria italica
Seita.2G438800 5.0kb upstream 5.0kb upstream 8413 true scaffold_2: 48807098-48815510 Setaria italica
Seita.2G438800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48810511-48815510 Setaria italica
Seita.2G438800 5.0kb downstream 5.0kb downstream 8413 true scaffold_2: 48802098-48810510 Setaria italica
Seita.2G438800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48802098-48807097 Setaria italica
Seita.2G438800 10.0kb upstream 10.0kb upstream 13413 true scaffold_2: 48807098-48820510 Setaria italica
Seita.2G438800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48810511-48820510 Setaria italica
Seita.2G438800 10.0kb downstream 10.0kb downstream 13413 true scaffold_2: 48797098-48810510 Setaria italica
Seita.2G438800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48797098-48807097 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189859 5267 Panicoideae View MSA
124577606 5269 Grass View MSA
122041568 5273 Angiosperm View MSA
123429014 5275 Viridiplantae View MSA
121344744 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.324        
cufflinks 7.239       Low
cufflinks 21.134     High High
cufflinks 26.084     High High
cufflinks 23.95     High High
cufflinks 7.821        
cufflinks 14.406     High  
cufflinks 21.295     High High
cufflinks 26.036     High High
cufflinks 9.644        
cufflinks 6.766       Low
cufflinks 9.076        
cufflinks 12.208        
cufflinks 24.773     High High
cufflinks 7.814        
cufflinks 10.906        
cufflinks 8.227        
cufflinks 10.912        
cufflinks 21.664     High High
cufflinks 7.75       Low

0 Strain