Gene : Seita.2G396900 S. italica v2.2
Defline:  (1 of 5) PTHR24078:SF231 - CHAPERONE PROTEIN DNAJ Genomic Order:  3969
Name:  ? Seita.2G396900 Secondary Identifier:  ? PAC:32718693
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G396900 0.5kb upstream 0.5kb upstream 3769 true scaffold_2: 46139506-46143274 Setaria italica
Seita.2G396900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46142775-46143274 Setaria italica
Seita.2G396900 0.5kb downstream 0.5kb downstream 3769 true scaffold_2: 46139006-46142774 Setaria italica
Seita.2G396900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46139006-46139505 Setaria italica
Seita.2G396900 1.0kb upstream 1.0kb upstream 4269 true scaffold_2: 46139506-46143774 Setaria italica
Seita.2G396900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46142775-46143774 Setaria italica
Seita.2G396900 1.0kb downstream 1.0kb downstream 4269 true scaffold_2: 46138506-46142774 Setaria italica
Seita.2G396900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46138506-46139505 Setaria italica
Seita.2G396900 2.0kb upstream 2.0kb upstream 5269 true scaffold_2: 46139506-46144774 Setaria italica
Seita.2G396900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46142775-46144774 Setaria italica
Seita.2G396900 2.0kb downstream 2.0kb downstream 5269 true scaffold_2: 46137506-46142774 Setaria italica
Seita.2G396900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46137506-46139505 Setaria italica
Seita.2G396900 5.0kb upstream 5.0kb upstream 8269 true scaffold_2: 46139506-46147774 Setaria italica
Seita.2G396900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46142775-46147774 Setaria italica
Seita.2G396900 5.0kb downstream 5.0kb downstream 8269 true scaffold_2: 46134506-46142774 Setaria italica
Seita.2G396900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46134506-46139505 Setaria italica
Seita.2G396900 10.0kb upstream 10.0kb upstream 13269 true scaffold_2: 46139506-46152774 Setaria italica
Seita.2G396900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46142775-46152774 Setaria italica
Seita.2G396900 10.0kb downstream 10.0kb downstream 13269 true scaffold_2: 46129506-46142774 Setaria italica
Seita.2G396900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46129506-46139505 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027264 5273 Angiosperm View MSA
122180841 5267 Panicoideae View MSA
124568904 5269 Grass View MSA
123429067 5275 Viridiplantae View MSA
121348781 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.936        
cufflinks 1.375        
cufflinks 4.815        
cufflinks 5.441       High
cufflinks 4.271        
cufflinks 1.217        
cufflinks 3.925        
cufflinks 5.11       High
cufflinks 1.973        
cufflinks 0.825       Low
cufflinks 0.675       Low
cufflinks 1.116        
cufflinks 0.797       Low
cufflinks 4.485        
cufflinks 0.917        
cufflinks 6.433       High
cufflinks 1.067        
cufflinks 2.712        
cufflinks 8.911       High
cufflinks 0.921        

0 Strain