Gene : Seita.2G396600 S. italica v2.2
Defline:  (1 of 1) PTHR11165:SF24 - S-PHASE KINASE-ASSOCIATED PROTEIN 1 Genomic Order:  3966
Name:  ? Seita.2G396600 Secondary Identifier:  ? PAC:32722263
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G396600 0.5kb upstream 0.5kb upstream 1697 true scaffold_2: 46113812-46115508 Setaria italica
Seita.2G396600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46113812-46114311 Setaria italica
Seita.2G396600 0.5kb downstream 0.5kb downstream 1697 true scaffold_2: 46114312-46116008 Setaria italica
Seita.2G396600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46115509-46116008 Setaria italica
Seita.2G396600 1.0kb upstream 1.0kb upstream 2197 true scaffold_2: 46113312-46115508 Setaria italica
Seita.2G396600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46113312-46114311 Setaria italica
Seita.2G396600 1.0kb downstream 1.0kb downstream 2197 true scaffold_2: 46114312-46116508 Setaria italica
Seita.2G396600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46115509-46116508 Setaria italica
Seita.2G396600 2.0kb upstream 2.0kb upstream 3197 true scaffold_2: 46112312-46115508 Setaria italica
Seita.2G396600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46112312-46114311 Setaria italica
Seita.2G396600 2.0kb downstream 2.0kb downstream 3197 true scaffold_2: 46114312-46117508 Setaria italica
Seita.2G396600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46115509-46117508 Setaria italica
Seita.2G396600 5.0kb upstream 5.0kb upstream 6197 true scaffold_2: 46109312-46115508 Setaria italica
Seita.2G396600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46109312-46114311 Setaria italica
Seita.2G396600 5.0kb downstream 5.0kb downstream 6197 true scaffold_2: 46114312-46120508 Setaria italica
Seita.2G396600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46115509-46120508 Setaria italica
Seita.2G396600 10.0kb upstream 10.0kb upstream 11197 true scaffold_2: 46104312-46115508 Setaria italica
Seita.2G396600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46104312-46114311 Setaria italica
Seita.2G396600 10.0kb downstream 10.0kb downstream 11197 true scaffold_2: 46114312-46125508 Setaria italica
Seita.2G396600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46115509-46125508 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029816 5273 Angiosperm View MSA
122199884 5267 Panicoideae View MSA
124581525 5269 Grass View MSA
121299090 5274 Embryophyte View MSA
123337010 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.024     Low  
cufflinks 0.386       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.273       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.057     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain