Gene : Seita.2G397000 S. italica v2.2
Defline:  (1 of 3) PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  3970
Name:  ? Seita.2G397000 Secondary Identifier:  ? PAC:32720257
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G397000 0.5kb upstream 0.5kb upstream 4318 true scaffold_2: 46142891-46147208 Setaria italica
Seita.2G397000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46146709-46147208 Setaria italica
Seita.2G397000 0.5kb downstream 0.5kb downstream 4318 true scaffold_2: 46142391-46146708 Setaria italica
Seita.2G397000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46142391-46142890 Setaria italica
Seita.2G397000 1.0kb upstream 1.0kb upstream 4818 true scaffold_2: 46142891-46147708 Setaria italica
Seita.2G397000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46146709-46147708 Setaria italica
Seita.2G397000 1.0kb downstream 1.0kb downstream 4818 true scaffold_2: 46141891-46146708 Setaria italica
Seita.2G397000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46141891-46142890 Setaria italica
Seita.2G397000 2.0kb upstream 2.0kb upstream 5818 true scaffold_2: 46142891-46148708 Setaria italica
Seita.2G397000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46146709-46148708 Setaria italica
Seita.2G397000 2.0kb downstream 2.0kb downstream 5818 true scaffold_2: 46140891-46146708 Setaria italica
Seita.2G397000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46140891-46142890 Setaria italica
Seita.2G397000 5.0kb upstream 5.0kb upstream 8818 true scaffold_2: 46142891-46151708 Setaria italica
Seita.2G397000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46146709-46151708 Setaria italica
Seita.2G397000 5.0kb downstream 5.0kb downstream 8818 true scaffold_2: 46137891-46146708 Setaria italica
Seita.2G397000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46137891-46142890 Setaria italica
Seita.2G397000 10.0kb upstream 10.0kb upstream 13818 true scaffold_2: 46142891-46156708 Setaria italica
Seita.2G397000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46146709-46156708 Setaria italica
Seita.2G397000 10.0kb downstream 10.0kb downstream 13818 true scaffold_2: 46132891-46146708 Setaria italica
Seita.2G397000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46132891-46142890 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
122199190 5267 Panicoideae View MSA
124568746 5269 Grass View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.368        
cufflinks 7.099       Low
cufflinks 17.405     High High
cufflinks 19.25     High High
cufflinks 12.462     High  
cufflinks 7.252       Low
cufflinks 7.635       Low
cufflinks 8.898        
cufflinks 6.224       Low
cufflinks 7.831       Low
cufflinks 9.052        
cufflinks 16.551     High  
cufflinks 18.807     High High
cufflinks 14.179     High  
cufflinks 12.059        
cufflinks 10.674        
cufflinks 12.857        
cufflinks 21.903     High High
cufflinks 14.344     High  
cufflinks 10.817        

0 Strain