Gene : Seita.2G408000 S. italica v2.2
Defline:  (1 of 3) KOG2014 - SMT3/SUMO-activating complex, AOS1/RAD31 component Genomic Order:  4080
Name:  ? Seita.2G408000 Secondary Identifier:  ? PAC:32723059
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G408000 0.5kb upstream 0.5kb upstream 5065 true scaffold_2: 46772328-46777392 Setaria italica
Seita.2G408000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46776893-46777392 Setaria italica
Seita.2G408000 0.5kb downstream 0.5kb downstream 5065 true scaffold_2: 46771828-46776892 Setaria italica
Seita.2G408000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46771828-46772327 Setaria italica
Seita.2G408000 1.0kb upstream 1.0kb upstream 5565 true scaffold_2: 46772328-46777892 Setaria italica
Seita.2G408000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46776893-46777892 Setaria italica
Seita.2G408000 1.0kb downstream 1.0kb downstream 5565 true scaffold_2: 46771328-46776892 Setaria italica
Seita.2G408000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46771328-46772327 Setaria italica
Seita.2G408000 2.0kb upstream 2.0kb upstream 6565 true scaffold_2: 46772328-46778892 Setaria italica
Seita.2G408000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46776893-46778892 Setaria italica
Seita.2G408000 2.0kb downstream 2.0kb downstream 6565 true scaffold_2: 46770328-46776892 Setaria italica
Seita.2G408000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46770328-46772327 Setaria italica
Seita.2G408000 5.0kb upstream 5.0kb upstream 9565 true scaffold_2: 46772328-46781892 Setaria italica
Seita.2G408000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46776893-46781892 Setaria italica
Seita.2G408000 5.0kb downstream 5.0kb downstream 9565 true scaffold_2: 46767328-46776892 Setaria italica
Seita.2G408000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46767328-46772327 Setaria italica
Seita.2G408000 10.0kb upstream 10.0kb upstream 14565 true scaffold_2: 46772328-46786892 Setaria italica
Seita.2G408000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46776893-46786892 Setaria italica
Seita.2G408000 10.0kb downstream 10.0kb downstream 14565 true scaffold_2: 46762328-46776892 Setaria italica
Seita.2G408000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46762328-46772327 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041218 5273 Angiosperm View MSA
122192870 5267 Panicoideae View MSA
124573638 5269 Grass View MSA
121348552 5274 Embryophyte View MSA
123424130 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.433       High
cufflinks 2.006        
cufflinks 2.554        
cufflinks 1.909        
cufflinks 1.334        
cufflinks 1.58        
cufflinks 1.752        
cufflinks 1.686        
cufflinks 0.978       Low
cufflinks 1.786        
cufflinks 2.042        
cufflinks 1.49        
cufflinks 1.39        
cufflinks 1.687        
cufflinks 1.853        
cufflinks 3.541       High
cufflinks 1.728        
cufflinks 4.342       High
cufflinks 1.499        
cufflinks 1.337        

0 Strain