Gene : Seita.2G413100 S. italica v2.2
Defline:  (1 of 2) PTHR10182//PTHR10182:SF15 - CALCIUM-BINDING PROTEIN 39-RELATED Genomic Order:  4131
Name:  ? Seita.2G413100 Secondary Identifier:  ? PAC:32719361
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G413100 0.5kb upstream 0.5kb upstream 5095 true scaffold_2: 47074693-47079787 Setaria italica
Seita.2G413100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47074693-47075192 Setaria italica
Seita.2G413100 0.5kb downstream 0.5kb downstream 5095 true scaffold_2: 47075193-47080287 Setaria italica
Seita.2G413100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47079788-47080287 Setaria italica
Seita.2G413100 1.0kb upstream 1.0kb upstream 5595 true scaffold_2: 47074193-47079787 Setaria italica
Seita.2G413100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47074193-47075192 Setaria italica
Seita.2G413100 1.0kb downstream 1.0kb downstream 5595 true scaffold_2: 47075193-47080787 Setaria italica
Seita.2G413100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47079788-47080787 Setaria italica
Seita.2G413100 2.0kb upstream 2.0kb upstream 6595 true scaffold_2: 47073193-47079787 Setaria italica
Seita.2G413100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47073193-47075192 Setaria italica
Seita.2G413100 2.0kb downstream 2.0kb downstream 6595 true scaffold_2: 47075193-47081787 Setaria italica
Seita.2G413100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47079788-47081787 Setaria italica
Seita.2G413100 5.0kb upstream 5.0kb upstream 9595 true scaffold_2: 47070193-47079787 Setaria italica
Seita.2G413100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47070193-47075192 Setaria italica
Seita.2G413100 5.0kb downstream 5.0kb downstream 9595 true scaffold_2: 47075193-47084787 Setaria italica
Seita.2G413100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47079788-47084787 Setaria italica
Seita.2G413100 10.0kb upstream 10.0kb upstream 14595 true scaffold_2: 47065193-47079787 Setaria italica
Seita.2G413100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47065193-47075192 Setaria italica
Seita.2G413100 10.0kb downstream 10.0kb downstream 14595 true scaffold_2: 47075193-47089787 Setaria italica
Seita.2G413100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47079788-47089787 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180443 5267 Panicoideae View MSA
124569503 5269 Grass View MSA
122042724 5273 Angiosperm View MSA
121345752 5274 Embryophyte View MSA
123425225 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.333        
cufflinks 6.253       High
cufflinks 1.178       Low
cufflinks 1.103       Low
cufflinks 1.715        
cufflinks 5.407        
cufflinks 3.259        
cufflinks 5.231        
cufflinks 4.053        
cufflinks 2.547        
cufflinks 4.075        
cufflinks 3.492        
cufflinks 5.256        
cufflinks 0.791       Low
cufflinks 4.433        
cufflinks 2.235        
cufflinks 4.704        
cufflinks 1.209       Low
cufflinks 0.627       Low
cufflinks 4.671        

0 Strain