Gene : Seita.2G419000 S. italica v2.2
Defline:  (1 of 2) PTHR12725//PTHR12725:SF60 - HALOACID DEHALOGENASE-LIKE HYDROLASE Genomic Order:  4190
Name:  ? Seita.2G419000 Secondary Identifier:  ? PAC:32722444
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G419000 0.5kb upstream 0.5kb upstream 3730 true scaffold_2: 47418549-47422278 Setaria italica
Seita.2G419000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 47421779-47422278 Setaria italica
Seita.2G419000 0.5kb downstream 0.5kb downstream 3730 true scaffold_2: 47418049-47421778 Setaria italica
Seita.2G419000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 47418049-47418548 Setaria italica
Seita.2G419000 1.0kb upstream 1.0kb upstream 4230 true scaffold_2: 47418549-47422778 Setaria italica
Seita.2G419000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 47421779-47422778 Setaria italica
Seita.2G419000 1.0kb downstream 1.0kb downstream 4230 true scaffold_2: 47417549-47421778 Setaria italica
Seita.2G419000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 47417549-47418548 Setaria italica
Seita.2G419000 2.0kb upstream 2.0kb upstream 5230 true scaffold_2: 47418549-47423778 Setaria italica
Seita.2G419000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 47421779-47423778 Setaria italica
Seita.2G419000 2.0kb downstream 2.0kb downstream 5230 true scaffold_2: 47416549-47421778 Setaria italica
Seita.2G419000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 47416549-47418548 Setaria italica
Seita.2G419000 5.0kb upstream 5.0kb upstream 8230 true scaffold_2: 47418549-47426778 Setaria italica
Seita.2G419000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 47421779-47426778 Setaria italica
Seita.2G419000 5.0kb downstream 5.0kb downstream 8230 true scaffold_2: 47413549-47421778 Setaria italica
Seita.2G419000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 47413549-47418548 Setaria italica
Seita.2G419000 10.0kb upstream 10.0kb upstream 13230 true scaffold_2: 47418549-47431778 Setaria italica
Seita.2G419000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 47421779-47431778 Setaria italica
Seita.2G419000 10.0kb downstream 10.0kb downstream 13230 true scaffold_2: 47408549-47421778 Setaria italica
Seita.2G419000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 47408549-47418548 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196411 5267 Panicoideae View MSA
124580158 5269 Grass View MSA
122042471 5273 Angiosperm View MSA
121309972 5274 Embryophyte View MSA
123428341 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.956       Low
cufflinks 15.198     High  
cufflinks 98.029     High High
cufflinks 126.207     High High
cufflinks 107.304     High High
cufflinks 9.724        
cufflinks 58.93     High  
cufflinks 78.721     High  
cufflinks 25.545     High  
cufflinks 4.822        
cufflinks 2.296       Low
cufflinks 4.616        
cufflinks 2.691       Low
cufflinks 78.91     High  
cufflinks 2.598       Low
cufflinks 122.106     High High
cufflinks 2.302       Low
cufflinks 12.511     High  
cufflinks 219.999     High High
cufflinks 1.548       Low

0 Strain