Gene : Seita.3G061000 S. italica v2.2
Defline:  (1 of 1) PTHR22600:SF16 - BETA-HEXOSAMINIDASE 1 Genomic Order:  610
Name:  ? Seita.3G061000 Secondary Identifier:  ? PAC:32712689
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G061000 0.5kb upstream 0.5kb upstream 6716 true scaffold_3: 3871720-3878435 Setaria italica
Seita.3G061000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 3871720-3872219 Setaria italica
Seita.3G061000 0.5kb downstream 0.5kb downstream 6716 true scaffold_3: 3872220-3878935 Setaria italica
Seita.3G061000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 3878436-3878935 Setaria italica
Seita.3G061000 1.0kb upstream 1.0kb upstream 7216 true scaffold_3: 3871220-3878435 Setaria italica
Seita.3G061000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 3871220-3872219 Setaria italica
Seita.3G061000 1.0kb downstream 1.0kb downstream 7216 true scaffold_3: 3872220-3879435 Setaria italica
Seita.3G061000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 3878436-3879435 Setaria italica
Seita.3G061000 2.0kb upstream 2.0kb upstream 8216 true scaffold_3: 3870220-3878435 Setaria italica
Seita.3G061000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 3870220-3872219 Setaria italica
Seita.3G061000 2.0kb downstream 2.0kb downstream 8216 true scaffold_3: 3872220-3880435 Setaria italica
Seita.3G061000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 3878436-3880435 Setaria italica
Seita.3G061000 5.0kb upstream 5.0kb upstream 11216 true scaffold_3: 3867220-3878435 Setaria italica
Seita.3G061000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 3867220-3872219 Setaria italica
Seita.3G061000 5.0kb downstream 5.0kb downstream 11216 true scaffold_3: 3872220-3883435 Setaria italica
Seita.3G061000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 3878436-3883435 Setaria italica
Seita.3G061000 10.0kb upstream 10.0kb upstream 16216 true scaffold_3: 3862220-3878435 Setaria italica
Seita.3G061000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 3862220-3872219 Setaria italica
Seita.3G061000 10.0kb downstream 10.0kb downstream 16216 true scaffold_3: 3872220-3888435 Setaria italica
Seita.3G061000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 3878436-3888435 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182822 5267 Panicoideae View MSA
124574726 5269 Grass View MSA
122047167 5273 Angiosperm View MSA
121346826 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.646        
cufflinks 9.194        
cufflinks 13.738     High  
cufflinks 12.426     High  
cufflinks 8.372        
cufflinks 9.146        
cufflinks 7.27       Low
cufflinks 9.853        
cufflinks 6.158       Low
cufflinks 19.196     High High
cufflinks 13.991     High High
cufflinks 10.326        
cufflinks 16.376     High High
cufflinks 10.065        
cufflinks 15.145     High High
cufflinks 7.435       Low
cufflinks 8.723        
cufflinks 6.321       Low
cufflinks 10.171        
cufflinks 11.81        

0 Strain