Gene : Seita.3G064700 S. italica v2.2
Defline:  (1 of 4) PTHR15371:SF2 - OUTER ENVELOPE PORE PROTEIN 16-1, CHLOROPLASTIC Genomic Order:  647
Name:  ? Seita.3G064700 Secondary Identifier:  ? PAC:32712280
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G064700 0.5kb upstream 0.5kb upstream 3739 true scaffold_3: 4135093-4138831 Setaria italica
Seita.3G064700 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 4138332-4138831 Setaria italica
Seita.3G064700 0.5kb downstream 0.5kb downstream 3739 true scaffold_3: 4134593-4138331 Setaria italica
Seita.3G064700 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 4134593-4135092 Setaria italica
Seita.3G064700 1.0kb upstream 1.0kb upstream 4239 true scaffold_3: 4135093-4139331 Setaria italica
Seita.3G064700 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 4138332-4139331 Setaria italica
Seita.3G064700 1.0kb downstream 1.0kb downstream 4239 true scaffold_3: 4134093-4138331 Setaria italica
Seita.3G064700 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 4134093-4135092 Setaria italica
Seita.3G064700 2.0kb upstream 2.0kb upstream 5239 true scaffold_3: 4135093-4140331 Setaria italica
Seita.3G064700 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 4138332-4140331 Setaria italica
Seita.3G064700 2.0kb downstream 2.0kb downstream 5239 true scaffold_3: 4133093-4138331 Setaria italica
Seita.3G064700 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 4133093-4135092 Setaria italica
Seita.3G064700 5.0kb upstream 5.0kb upstream 8239 true scaffold_3: 4135093-4143331 Setaria italica
Seita.3G064700 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 4138332-4143331 Setaria italica
Seita.3G064700 5.0kb downstream 5.0kb downstream 8239 true scaffold_3: 4130093-4138331 Setaria italica
Seita.3G064700 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 4130093-4135092 Setaria italica
Seita.3G064700 10.0kb upstream 10.0kb upstream 13239 true scaffold_3: 4135093-4148331 Setaria italica
Seita.3G064700 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 4138332-4148331 Setaria italica
Seita.3G064700 10.0kb downstream 10.0kb downstream 13239 true scaffold_3: 4125093-4138331 Setaria italica
Seita.3G064700 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 4125093-4135092 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176927 5267 Panicoideae View MSA
124577178 5269 Grass View MSA
122042494 5273 Angiosperm View MSA
121351081 5274 Embryophyte View MSA
123382000 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.982        
cufflinks 4.593        
cufflinks 6.982        
cufflinks 13.373     High High
cufflinks 13.165     High High
cufflinks 5.156        
cufflinks 7.078        
cufflinks 13.345       High
cufflinks 10.694        
cufflinks 2.72        
cufflinks 1.196       Low
cufflinks 0.974       Low
cufflinks 1.008       Low
cufflinks 8.623        
cufflinks 0.845       Low
cufflinks 7.088        
cufflinks 1.182       Low
cufflinks 1.576        
cufflinks 16.481     High High
cufflinks 0.952       Low

0 Strain