Gene : Seita.3G091100 S. italica v2.2
Defline:  (1 of 1) PTHR23089:SF7 - HIT FAMILY PROTEIN 1 Genomic Order:  911
Name:  ? Seita.3G091100 Secondary Identifier:  ? PAC:32714566
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G091100 0.5kb upstream 0.5kb upstream 5973 true scaffold_3: 5898134-5904106 Setaria italica
Seita.3G091100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 5903607-5904106 Setaria italica
Seita.3G091100 0.5kb downstream 0.5kb downstream 5973 true scaffold_3: 5897634-5903606 Setaria italica
Seita.3G091100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 5897634-5898133 Setaria italica
Seita.3G091100 1.0kb upstream 1.0kb upstream 6473 true scaffold_3: 5898134-5904606 Setaria italica
Seita.3G091100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 5903607-5904606 Setaria italica
Seita.3G091100 1.0kb downstream 1.0kb downstream 6473 true scaffold_3: 5897134-5903606 Setaria italica
Seita.3G091100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 5897134-5898133 Setaria italica
Seita.3G091100 2.0kb upstream 2.0kb upstream 7473 true scaffold_3: 5898134-5905606 Setaria italica
Seita.3G091100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 5903607-5905606 Setaria italica
Seita.3G091100 2.0kb downstream 2.0kb downstream 7473 true scaffold_3: 5896134-5903606 Setaria italica
Seita.3G091100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 5896134-5898133 Setaria italica
Seita.3G091100 5.0kb upstream 5.0kb upstream 10473 true scaffold_3: 5898134-5908606 Setaria italica
Seita.3G091100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 5903607-5908606 Setaria italica
Seita.3G091100 5.0kb downstream 5.0kb downstream 10473 true scaffold_3: 5893134-5903606 Setaria italica
Seita.3G091100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 5893134-5898133 Setaria italica
Seita.3G091100 10.0kb upstream 10.0kb upstream 15473 true scaffold_3: 5898134-5913606 Setaria italica
Seita.3G091100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 5903607-5913606 Setaria italica
Seita.3G091100 10.0kb downstream 10.0kb downstream 15473 true scaffold_3: 5888134-5903606 Setaria italica
Seita.3G091100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 5888134-5898133 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181807 5267 Panicoideae View MSA
124579105 5269 Grass View MSA
122049116 5273 Angiosperm View MSA
121311254 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.423        
cufflinks 0.395        
cufflinks 0.509        
cufflinks 0.368        
cufflinks 0.364        
cufflinks 0.392        
cufflinks 0.635       High
cufflinks 0.645       High
cufflinks 0.419        
cufflinks 0.422        
cufflinks 0.238        
cufflinks 0.205       Low
cufflinks 0.226        
cufflinks 0.463        
cufflinks 0.162       Low
cufflinks 1.134       High
cufflinks 0.182       Low
cufflinks 0.551        
cufflinks 0.406        
cufflinks 0.133     Low Low

0 Strain