Gene : Seita.3G022100 S. italica v2.2
Defline:  (1 of 19) PF03110 - SBP domain (SBP) Genomic Order:  221
Name:  ? Seita.3G022100 Secondary Identifier:  ? PAC:32711511
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G022100 0.5kb upstream 0.5kb upstream 4341 true scaffold_3: 1348242-1352582 Setaria italica
Seita.3G022100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1348242-1348741 Setaria italica
Seita.3G022100 0.5kb downstream 0.5kb downstream 4341 true scaffold_3: 1348742-1353082 Setaria italica
Seita.3G022100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1352583-1353082 Setaria italica
Seita.3G022100 1.0kb upstream 1.0kb upstream 4841 true scaffold_3: 1347742-1352582 Setaria italica
Seita.3G022100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1347742-1348741 Setaria italica
Seita.3G022100 1.0kb downstream 1.0kb downstream 4841 true scaffold_3: 1348742-1353582 Setaria italica
Seita.3G022100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1352583-1353582 Setaria italica
Seita.3G022100 2.0kb upstream 2.0kb upstream 5841 true scaffold_3: 1346742-1352582 Setaria italica
Seita.3G022100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1346742-1348741 Setaria italica
Seita.3G022100 2.0kb downstream 2.0kb downstream 5841 true scaffold_3: 1348742-1354582 Setaria italica
Seita.3G022100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1352583-1354582 Setaria italica
Seita.3G022100 5.0kb upstream 5.0kb upstream 8841 true scaffold_3: 1343742-1352582 Setaria italica
Seita.3G022100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1343742-1348741 Setaria italica
Seita.3G022100 5.0kb downstream 5.0kb downstream 8841 true scaffold_3: 1348742-1357582 Setaria italica
Seita.3G022100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1352583-1357582 Setaria italica
Seita.3G022100 10.0kb upstream 10.0kb upstream 13841 true scaffold_3: 1338742-1352582 Setaria italica
Seita.3G022100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1338742-1348741 Setaria italica
Seita.3G022100 10.0kb downstream 10.0kb downstream 13841 true scaffold_3: 1348742-1362582 Setaria italica
Seita.3G022100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1352583-1362582 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195548 5267 Panicoideae View MSA
124586025 5269 Grass View MSA
122042410 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121309962 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.821        
cufflinks 4.463       High
cufflinks 0.347        
cufflinks 0.257       Low
cufflinks 0.417        
cufflinks 4.236       High
cufflinks 2.564       High
cufflinks 2.177       High
cufflinks 1.464        
cufflinks 0.462        
cufflinks 0.627        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.327        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.87        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.295        
cufflinks 0.275       Low
cufflinks 0.0     Not Expressed Not Expressed

0 Strain