Gene : Seita.3G025900 S. italica v2.2
Defline:  (1 of 1) PTHR10192 - MOLYBDOPTERIN BIOSYNTHESIS PROTEIN Genomic Order:  259
Name:  ? Seita.3G025900 Secondary Identifier:  ? PAC:32710424
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6823 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G025900 0.5kb upstream 0.5kb upstream 7434 true scaffold_3: 1560236-1567669 Setaria italica
Seita.3G025900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1560236-1560735 Setaria italica
Seita.3G025900 0.5kb downstream 0.5kb downstream 7434 true scaffold_3: 1560736-1568169 Setaria italica
Seita.3G025900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1567670-1568169 Setaria italica
Seita.3G025900 1.0kb upstream 1.0kb upstream 7934 true scaffold_3: 1559736-1567669 Setaria italica
Seita.3G025900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1559736-1560735 Setaria italica
Seita.3G025900 1.0kb downstream 1.0kb downstream 7934 true scaffold_3: 1560736-1568669 Setaria italica
Seita.3G025900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1567670-1568669 Setaria italica
Seita.3G025900 2.0kb upstream 2.0kb upstream 8934 true scaffold_3: 1558736-1567669 Setaria italica
Seita.3G025900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1558736-1560735 Setaria italica
Seita.3G025900 2.0kb downstream 2.0kb downstream 8934 true scaffold_3: 1560736-1569669 Setaria italica
Seita.3G025900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1567670-1569669 Setaria italica
Seita.3G025900 5.0kb upstream 5.0kb upstream 11934 true scaffold_3: 1555736-1567669 Setaria italica
Seita.3G025900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1555736-1560735 Setaria italica
Seita.3G025900 5.0kb downstream 5.0kb downstream 11934 true scaffold_3: 1560736-1572669 Setaria italica
Seita.3G025900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1567670-1572669 Setaria italica
Seita.3G025900 10.0kb upstream 10.0kb upstream 16934 true scaffold_3: 1550736-1567669 Setaria italica
Seita.3G025900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1550736-1560735 Setaria italica
Seita.3G025900 10.0kb downstream 10.0kb downstream 16934 true scaffold_3: 1560736-1577669 Setaria italica
Seita.3G025900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1567670-1577669 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190326 5267 Panicoideae View MSA
124582147 5269 Grass View MSA
122044086 5273 Angiosperm View MSA
121347061 5274 Embryophyte View MSA
123428395 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.166     High  
cufflinks 7.138       Low
cufflinks 8.122       Low
cufflinks 8.768        
cufflinks 9.408        
cufflinks 7.926       Low
cufflinks 12.005        
cufflinks 8.456       Low
cufflinks 11.909        
cufflinks 17.611     High  
cufflinks 15.407     High  
cufflinks 17.601     High  
cufflinks 27.742     High High
cufflinks 9.097        
cufflinks 24.294     High High
cufflinks 11.688        
cufflinks 30.034     High High
cufflinks 19.853     High  
cufflinks 10.255        
cufflinks 22.606     High High

0 Strain