Gene : Seita.3G025100 S. italica v2.2
Defline:  (1 of 2) PTHR10566//PTHR10566:SF93 - CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED Genomic Order:  251
Name:  ? Seita.3G025100 Secondary Identifier:  ? PAC:32714453
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G025100 0.5kb upstream 0.5kb upstream 5116 true scaffold_3: 1516893-1522008 Setaria italica
Seita.3G025100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1521509-1522008 Setaria italica
Seita.3G025100 0.5kb downstream 0.5kb downstream 5116 true scaffold_3: 1516393-1521508 Setaria italica
Seita.3G025100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1516393-1516892 Setaria italica
Seita.3G025100 1.0kb upstream 1.0kb upstream 5616 true scaffold_3: 1516893-1522508 Setaria italica
Seita.3G025100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1521509-1522508 Setaria italica
Seita.3G025100 1.0kb downstream 1.0kb downstream 5616 true scaffold_3: 1515893-1521508 Setaria italica
Seita.3G025100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1515893-1516892 Setaria italica
Seita.3G025100 2.0kb upstream 2.0kb upstream 6616 true scaffold_3: 1516893-1523508 Setaria italica
Seita.3G025100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1521509-1523508 Setaria italica
Seita.3G025100 2.0kb downstream 2.0kb downstream 6616 true scaffold_3: 1514893-1521508 Setaria italica
Seita.3G025100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1514893-1516892 Setaria italica
Seita.3G025100 5.0kb upstream 5.0kb upstream 9616 true scaffold_3: 1516893-1526508 Setaria italica
Seita.3G025100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1521509-1526508 Setaria italica
Seita.3G025100 5.0kb downstream 5.0kb downstream 9616 true scaffold_3: 1511893-1521508 Setaria italica
Seita.3G025100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1511893-1516892 Setaria italica
Seita.3G025100 10.0kb upstream 10.0kb upstream 14616 true scaffold_3: 1516893-1531508 Setaria italica
Seita.3G025100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1521509-1531508 Setaria italica
Seita.3G025100 10.0kb downstream 10.0kb downstream 14616 true scaffold_3: 1506893-1521508 Setaria italica
Seita.3G025100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1506893-1516892 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183238 5267 Panicoideae View MSA
124580780 5269 Grass View MSA
122043373 5273 Angiosperm View MSA
121343858 5274 Embryophyte View MSA
123428037 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.645       High
cufflinks 6.637        
cufflinks 6.153        
cufflinks 4.964       Low
cufflinks 5.814        
cufflinks 6.303        
cufflinks 5.939        
cufflinks 4.124       Low
cufflinks 7.084        
cufflinks 4.056       Low
cufflinks 7.713       High
cufflinks 6.368        
cufflinks 6.292        
cufflinks 5.729        
cufflinks 7.705       High
cufflinks 6.736        
cufflinks 6.343        
cufflinks 6.75        
cufflinks 5.588        
cufflinks 7.146        

0 Strain