Gene : Seita.3G027900 S. italica v2.2
Defline:  (1 of 1) PTHR23354:SF67 - TLD-DOMAIN CONTAINING NUCLEOLAR PROTEIN Genomic Order:  279
Name:  ? Seita.3G027900 Secondary Identifier:  ? PAC:32711716
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G027900 0.5kb upstream 0.5kb upstream 4339 true scaffold_3: 1701444-1705782 Setaria italica
Seita.3G027900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1705283-1705782 Setaria italica
Seita.3G027900 0.5kb downstream 0.5kb downstream 4339 true scaffold_3: 1700944-1705282 Setaria italica
Seita.3G027900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1700944-1701443 Setaria italica
Seita.3G027900 1.0kb upstream 1.0kb upstream 4839 true scaffold_3: 1701444-1706282 Setaria italica
Seita.3G027900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1705283-1706282 Setaria italica
Seita.3G027900 1.0kb downstream 1.0kb downstream 4839 true scaffold_3: 1700444-1705282 Setaria italica
Seita.3G027900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1700444-1701443 Setaria italica
Seita.3G027900 2.0kb upstream 2.0kb upstream 5839 true scaffold_3: 1701444-1707282 Setaria italica
Seita.3G027900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1705283-1707282 Setaria italica
Seita.3G027900 2.0kb downstream 2.0kb downstream 5839 true scaffold_3: 1699444-1705282 Setaria italica
Seita.3G027900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1699444-1701443 Setaria italica
Seita.3G027900 5.0kb upstream 5.0kb upstream 8839 true scaffold_3: 1701444-1710282 Setaria italica
Seita.3G027900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1705283-1710282 Setaria italica
Seita.3G027900 5.0kb downstream 5.0kb downstream 8839 true scaffold_3: 1696444-1705282 Setaria italica
Seita.3G027900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1696444-1701443 Setaria italica
Seita.3G027900 10.0kb upstream 10.0kb upstream 13839 true scaffold_3: 1701444-1715282 Setaria italica
Seita.3G027900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1705283-1715282 Setaria italica
Seita.3G027900 10.0kb downstream 10.0kb downstream 13839 true scaffold_3: 1691444-1705282 Setaria italica
Seita.3G027900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1691444-1701443 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191226 5267 Panicoideae View MSA
124569570 5269 Grass View MSA
122042380 5273 Angiosperm View MSA
121345600 5274 Embryophyte View MSA
123380242 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.059        
cufflinks 3.338       Low
cufflinks 12.301     High  
cufflinks 17.122     High High
cufflinks 16.046     High High
cufflinks 3.076       Low
cufflinks 11.065        
cufflinks 7.181        
cufflinks 7.25        
cufflinks 5.847        
cufflinks 4.718       Low
cufflinks 4.864        
cufflinks 15.231     High High
cufflinks 8.643        
cufflinks 4.761       Low
cufflinks 10.026        
cufflinks 7.333        
cufflinks 9.936        
cufflinks 14.849     High High
cufflinks 10.49        

0 Strain