Gene : Seita.3G035800 S. italica v2.2
Defline:  (1 of 3) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  358
Name:  ? Seita.3G035800 Secondary Identifier:  ? PAC:32713143
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G035800 0.5kb upstream 0.5kb upstream 5289 true scaffold_3: 2168095-2173383 Setaria italica
Seita.3G035800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2168095-2168594 Setaria italica
Seita.3G035800 0.5kb downstream 0.5kb downstream 5289 true scaffold_3: 2168595-2173883 Setaria italica
Seita.3G035800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2173384-2173883 Setaria italica
Seita.3G035800 1.0kb upstream 1.0kb upstream 5789 true scaffold_3: 2167595-2173383 Setaria italica
Seita.3G035800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2167595-2168594 Setaria italica
Seita.3G035800 1.0kb downstream 1.0kb downstream 5789 true scaffold_3: 2168595-2174383 Setaria italica
Seita.3G035800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2173384-2174383 Setaria italica
Seita.3G035800 2.0kb upstream 2.0kb upstream 6789 true scaffold_3: 2166595-2173383 Setaria italica
Seita.3G035800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2166595-2168594 Setaria italica
Seita.3G035800 2.0kb downstream 2.0kb downstream 6789 true scaffold_3: 2168595-2175383 Setaria italica
Seita.3G035800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2173384-2175383 Setaria italica
Seita.3G035800 5.0kb upstream 5.0kb upstream 9789 true scaffold_3: 2163595-2173383 Setaria italica
Seita.3G035800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2163595-2168594 Setaria italica
Seita.3G035800 5.0kb downstream 5.0kb downstream 9789 true scaffold_3: 2168595-2178383 Setaria italica
Seita.3G035800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2173384-2178383 Setaria italica
Seita.3G035800 10.0kb upstream 10.0kb upstream 14789 true scaffold_3: 2158595-2173383 Setaria italica
Seita.3G035800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2158595-2168594 Setaria italica
Seita.3G035800 10.0kb downstream 10.0kb downstream 14789 true scaffold_3: 2168595-2183383 Setaria italica
Seita.3G035800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2173384-2183383 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195247 5267 Panicoideae View MSA
124584532 5269 Grass View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 86.785     High High
cufflinks 40.62     High  
cufflinks 25.862     High  
cufflinks 16.777     High Low
cufflinks 29.911     High  
cufflinks 40.832     High  
cufflinks 45.327     High  
cufflinks 35.004     High  
cufflinks 60.52     High  
cufflinks 51.463     High  
cufflinks 81.38     High High
cufflinks 38.407     High  
cufflinks 29.983     High  
cufflinks 28.045     High  
cufflinks 40.176     High  
cufflinks 80.77     High High
cufflinks 36.292     High  
cufflinks 108.845     High High
cufflinks 20.9     High Low
cufflinks 36.775     High  

0 Strain