Gene : Seita.3G039500 S. italica v2.2
Defline:  (1 of 1) PTHR22939:SF83 - PROTEASE DO-LIKE 2, CHLOROPLASTIC Genomic Order:  395
Name:  ? Seita.3G039500 Secondary Identifier:  ? PAC:32709779
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G039500 0.5kb upstream 0.5kb upstream 9080 true scaffold_3: 2387514-2396593 Setaria italica
Seita.3G039500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2396094-2396593 Setaria italica
Seita.3G039500 0.5kb downstream 0.5kb downstream 9080 true scaffold_3: 2387014-2396093 Setaria italica
Seita.3G039500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2387014-2387513 Setaria italica
Seita.3G039500 1.0kb upstream 1.0kb upstream 9580 true scaffold_3: 2387514-2397093 Setaria italica
Seita.3G039500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2396094-2397093 Setaria italica
Seita.3G039500 1.0kb downstream 1.0kb downstream 9580 true scaffold_3: 2386514-2396093 Setaria italica
Seita.3G039500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2386514-2387513 Setaria italica
Seita.3G039500 2.0kb upstream 2.0kb upstream 10580 true scaffold_3: 2387514-2398093 Setaria italica
Seita.3G039500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2396094-2398093 Setaria italica
Seita.3G039500 2.0kb downstream 2.0kb downstream 10580 true scaffold_3: 2385514-2396093 Setaria italica
Seita.3G039500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2385514-2387513 Setaria italica
Seita.3G039500 5.0kb upstream 5.0kb upstream 13580 true scaffold_3: 2387514-2401093 Setaria italica
Seita.3G039500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2396094-2401093 Setaria italica
Seita.3G039500 5.0kb downstream 5.0kb downstream 13580 true scaffold_3: 2382514-2396093 Setaria italica
Seita.3G039500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2382514-2387513 Setaria italica
Seita.3G039500 10.0kb upstream 10.0kb upstream 18580 true scaffold_3: 2387514-2406093 Setaria italica
Seita.3G039500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2396094-2406093 Setaria italica
Seita.3G039500 10.0kb downstream 10.0kb downstream 18580 true scaffold_3: 2377514-2396093 Setaria italica
Seita.3G039500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2377514-2387513 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180010 5267 Panicoideae View MSA
124574247 5269 Grass View MSA
122044524 5273 Angiosperm View MSA
123429293 5275 Viridiplantae View MSA
121310306 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.221        
cufflinks 4.54        
cufflinks 7.517        
cufflinks 4.388        
cufflinks 8.843        
cufflinks 6.513        
cufflinks 14.876     High High
cufflinks 16.948     High High
cufflinks 30.166     High High
cufflinks 2.768        
cufflinks 4.201        
cufflinks 1.147       Low
cufflinks 1.857       Low
cufflinks 10.785        
cufflinks 0.979       Low
cufflinks 11.552        
cufflinks 1.484       Low
cufflinks 4.1        
cufflinks 3.648        
cufflinks 1.49       Low

0 Strain