Gene : Seita.3G047400 S. italica v2.2
Defline:  (1 of 2) PTHR31189:SF1 - 12S SEED STORAGE PROTEIN CRA1-RELATED Genomic Order:  474
Name:  ? Seita.3G047400 Secondary Identifier:  ? PAC:32712075
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G047400 0.5kb upstream 0.5kb upstream 3113 true scaffold_3: 2902046-2905158 Setaria italica
Seita.3G047400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 2902046-2902545 Setaria italica
Seita.3G047400 0.5kb downstream 0.5kb downstream 3113 true scaffold_3: 2902546-2905658 Setaria italica
Seita.3G047400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 2905159-2905658 Setaria italica
Seita.3G047400 1.0kb upstream 1.0kb upstream 3613 true scaffold_3: 2901546-2905158 Setaria italica
Seita.3G047400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 2901546-2902545 Setaria italica
Seita.3G047400 1.0kb downstream 1.0kb downstream 3613 true scaffold_3: 2902546-2906158 Setaria italica
Seita.3G047400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 2905159-2906158 Setaria italica
Seita.3G047400 2.0kb upstream 2.0kb upstream 4613 true scaffold_3: 2900546-2905158 Setaria italica
Seita.3G047400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 2900546-2902545 Setaria italica
Seita.3G047400 2.0kb downstream 2.0kb downstream 4613 true scaffold_3: 2902546-2907158 Setaria italica
Seita.3G047400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 2905159-2907158 Setaria italica
Seita.3G047400 5.0kb upstream 5.0kb upstream 7613 true scaffold_3: 2897546-2905158 Setaria italica
Seita.3G047400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 2897546-2902545 Setaria italica
Seita.3G047400 5.0kb downstream 5.0kb downstream 7613 true scaffold_3: 2902546-2910158 Setaria italica
Seita.3G047400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 2905159-2910158 Setaria italica
Seita.3G047400 10.0kb upstream 10.0kb upstream 12613 true scaffold_3: 2892546-2905158 Setaria italica
Seita.3G047400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 2892546-2902545 Setaria italica
Seita.3G047400 10.0kb downstream 10.0kb downstream 12613 true scaffold_3: 2902546-2915158 Setaria italica
Seita.3G047400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 2905159-2915158 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187670 5267 Panicoideae View MSA
124590698 5269 Grass View MSA
122051681 5273 Angiosperm View MSA
121312610 5274 Embryophyte View MSA
123349767 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 11.327       High
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 8.192       High
cufflinks 0.157        
cufflinks 0.052     Low  
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.074     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain