Gene : Seita.3G135400 S. italica v2.2
Defline:  (1 of 2) PTHR23257:SF512 - PROTEIN KINASE Genomic Order:  1354
Name:  ? Seita.3G135400 Secondary Identifier:  ? PAC:32714650
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G135400 0.5kb upstream 0.5kb upstream 4801 true scaffold_3: 9409869-9414669 Setaria italica
Seita.3G135400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 9409869-9410368 Setaria italica
Seita.3G135400 0.5kb downstream 0.5kb downstream 4801 true scaffold_3: 9410369-9415169 Setaria italica
Seita.3G135400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 9414670-9415169 Setaria italica
Seita.3G135400 1.0kb upstream 1.0kb upstream 5301 true scaffold_3: 9409369-9414669 Setaria italica
Seita.3G135400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 9409369-9410368 Setaria italica
Seita.3G135400 1.0kb downstream 1.0kb downstream 5301 true scaffold_3: 9410369-9415669 Setaria italica
Seita.3G135400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 9414670-9415669 Setaria italica
Seita.3G135400 2.0kb upstream 2.0kb upstream 6301 true scaffold_3: 9408369-9414669 Setaria italica
Seita.3G135400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 9408369-9410368 Setaria italica
Seita.3G135400 2.0kb downstream 2.0kb downstream 6301 true scaffold_3: 9410369-9416669 Setaria italica
Seita.3G135400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 9414670-9416669 Setaria italica
Seita.3G135400 5.0kb upstream 5.0kb upstream 9301 true scaffold_3: 9405369-9414669 Setaria italica
Seita.3G135400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 9405369-9410368 Setaria italica
Seita.3G135400 5.0kb downstream 5.0kb downstream 9301 true scaffold_3: 9410369-9419669 Setaria italica
Seita.3G135400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 9414670-9419669 Setaria italica
Seita.3G135400 10.0kb upstream 10.0kb upstream 14301 true scaffold_3: 9400369-9414669 Setaria italica
Seita.3G135400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 9400369-9410368 Setaria italica
Seita.3G135400 10.0kb downstream 10.0kb downstream 14301 true scaffold_3: 9410369-9424669 Setaria italica
Seita.3G135400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 9414670-9424669 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187141 5267 Panicoideae View MSA
124576101 5269 Grass View MSA
122041918 5273 Angiosperm View MSA
121348422 5274 Embryophyte View MSA
123380860 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.483     High High
cufflinks 6.469        
cufflinks 1.912       Low
cufflinks 2.156       Low
cufflinks 3.24        
cufflinks 4.859        
cufflinks 12.634        
cufflinks 4.451        
cufflinks 4.029        
cufflinks 12.807        
cufflinks 10.18        
cufflinks 12.306        
cufflinks 10.384        
cufflinks 1.46       Low
cufflinks 5.449        
cufflinks 13.945     High High
cufflinks 11.056        
cufflinks 16.681     High High
cufflinks 2.713       Low
cufflinks 6.348        

0 Strain