Gene : Seita.3G145900 S. italica v2.2
Defline:  (1 of 1) PTHR24073:SF346 - RAS-RELATED SMALL GTP-BINDING FAMILY PROTEIN Genomic Order:  1459
Name:  ? Seita.3G145900 Secondary Identifier:  ? PAC:32711732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G145900 0.5kb upstream 0.5kb upstream 2239 true scaffold_3: 10488109-10490347 Setaria italica
Seita.3G145900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10488109-10488608 Setaria italica
Seita.3G145900 0.5kb downstream 0.5kb downstream 2239 true scaffold_3: 10488609-10490847 Setaria italica
Seita.3G145900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10490348-10490847 Setaria italica
Seita.3G145900 1.0kb upstream 1.0kb upstream 2739 true scaffold_3: 10487609-10490347 Setaria italica
Seita.3G145900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10487609-10488608 Setaria italica
Seita.3G145900 1.0kb downstream 1.0kb downstream 2739 true scaffold_3: 10488609-10491347 Setaria italica
Seita.3G145900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10490348-10491347 Setaria italica
Seita.3G145900 2.0kb upstream 2.0kb upstream 3739 true scaffold_3: 10486609-10490347 Setaria italica
Seita.3G145900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10486609-10488608 Setaria italica
Seita.3G145900 2.0kb downstream 2.0kb downstream 3739 true scaffold_3: 10488609-10492347 Setaria italica
Seita.3G145900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10490348-10492347 Setaria italica
Seita.3G145900 5.0kb upstream 5.0kb upstream 6739 true scaffold_3: 10483609-10490347 Setaria italica
Seita.3G145900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10483609-10488608 Setaria italica
Seita.3G145900 5.0kb downstream 5.0kb downstream 6739 true scaffold_3: 10488609-10495347 Setaria italica
Seita.3G145900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10490348-10495347 Setaria italica
Seita.3G145900 10.0kb upstream 10.0kb upstream 11739 true scaffold_3: 10478609-10490347 Setaria italica
Seita.3G145900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10478609-10488608 Setaria italica
Seita.3G145900 10.0kb downstream 10.0kb downstream 11739 true scaffold_3: 10488609-10500347 Setaria italica
Seita.3G145900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10490348-10500347 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193937 5267 Panicoideae View MSA
124587924 5269 Grass View MSA
122042184 5273 Angiosperm View MSA
121351595 5274 Embryophyte View MSA
123426852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.364     High  
cufflinks 17.57     High  
cufflinks 8.895       Low
cufflinks 8.126       Low
cufflinks 9.114       Low
cufflinks 17.778     High  
cufflinks 17.535     High  
cufflinks 14.139     High  
cufflinks 14.38     High  
cufflinks 21.616     High High
cufflinks 16.131     High  
cufflinks 14.434     High  
cufflinks 12.189        
cufflinks 15.007     High  
cufflinks 19.344     High High
cufflinks 11.726        
cufflinks 16.987     High  
cufflinks 14.766     High  
cufflinks 12.678     High  
cufflinks 20.455     High High

0 Strain