Gene : Seita.3G144400 S. italica v2.2
Defline:  (1 of 5) PF02492 - CobW/HypB/UreG, nucleotide-binding domain (cobW) Genomic Order:  1444
Name:  ? Seita.3G144400 Secondary Identifier:  ? PAC:32709857
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G144400 0.5kb upstream 0.5kb upstream 3357 true scaffold_3: 10210253-10213609 Setaria italica
Seita.3G144400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 10210253-10210752 Setaria italica
Seita.3G144400 0.5kb downstream 0.5kb downstream 3357 true scaffold_3: 10210753-10214109 Setaria italica
Seita.3G144400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 10213610-10214109 Setaria italica
Seita.3G144400 1.0kb upstream 1.0kb upstream 3857 true scaffold_3: 10209753-10213609 Setaria italica
Seita.3G144400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 10209753-10210752 Setaria italica
Seita.3G144400 1.0kb downstream 1.0kb downstream 3857 true scaffold_3: 10210753-10214609 Setaria italica
Seita.3G144400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 10213610-10214609 Setaria italica
Seita.3G144400 2.0kb upstream 2.0kb upstream 4857 true scaffold_3: 10208753-10213609 Setaria italica
Seita.3G144400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 10208753-10210752 Setaria italica
Seita.3G144400 2.0kb downstream 2.0kb downstream 4857 true scaffold_3: 10210753-10215609 Setaria italica
Seita.3G144400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 10213610-10215609 Setaria italica
Seita.3G144400 5.0kb upstream 5.0kb upstream 7857 true scaffold_3: 10205753-10213609 Setaria italica
Seita.3G144400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 10205753-10210752 Setaria italica
Seita.3G144400 5.0kb downstream 5.0kb downstream 7857 true scaffold_3: 10210753-10218609 Setaria italica
Seita.3G144400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 10213610-10218609 Setaria italica
Seita.3G144400 10.0kb upstream 10.0kb upstream 12857 true scaffold_3: 10200753-10213609 Setaria italica
Seita.3G144400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 10200753-10210752 Setaria italica
Seita.3G144400 10.0kb downstream 10.0kb downstream 12857 true scaffold_3: 10210753-10223609 Setaria italica
Seita.3G144400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 10213610-10223609 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180541 5267 Panicoideae View MSA
124568578 5269 Grass View MSA
122042547 5273 Angiosperm View MSA
121348820 5274 Embryophyte View MSA
123425369 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.316        
cufflinks 6.735        
cufflinks 9.658        
cufflinks 7.807        
cufflinks 4.779        
cufflinks 6.907        
cufflinks 6.456        
cufflinks 11.306       High
cufflinks 6.628        
cufflinks 7.744        
cufflinks 5.972        
cufflinks 4.185        
cufflinks 6.944        
cufflinks 11.016        
cufflinks 14.155     High High
cufflinks 4.19        
cufflinks 9.534        
cufflinks 0.935       Low
cufflinks 5.962        
cufflinks 7.74        

0 Strain